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gridcount
G
Analyzed about 7 hours ago
gridcount is an analysis tool for Gromacs that creates 3D (number) densities from molecular dynamics trajectories. Typically, this is used to look at the density of water or ions near proteins or in channels. It provides tools to generate the 3D map in portable formats, 2D cylindrical averages and 1D linear averages ("density profiles")
Licenses:
gpl
rbdl
No analysis available
A C++ library that contains some essential rigid body dynamics library such as the Articulated Body Algorithm (ABA) for forward dynamics, Newton-Euler Algorithm for inverse dynamics and the Composite Rigid Body Algorithm (CRBA) for the efficient computation of the joint space inertia matrix.
Mostly written in language not available
Licenses:
zlib_libpng
relax (molecular dynamics analysis)
Analyzed about 5 hours ago
relax is a program designed for the study of molecular dynamics of organic molecules, proteins, RNA, DNA, sugars, and other biomolecules through the analysis of experimental NMR data. It supports exponential curve fitting for the calculation of the R1 and R2 relaxation rates, calculation of the NOE
Licenses:
gpl3_or_l...
sailfish-cfd
Analyzed about 23 hours ago
Sailfish is an Open Source fluid dynamics solver for CUDA devices. It uses the Lattice Boltzmann method to simulate incompressible and weakly compressible flows in 2D and 3D.
The project uses Python to maintain a rapid pace of development and high level of code readability. pycuda and numpy
ProDy
Analyzed about 19 hours ago
ProDy is a free and open-source Python package for analysis and modeling of protein structural dynamics. It allows for efficient analysis of large datasets and is suitable for development or prototyping of structure-based analysis and modeling software.
jmephysics 0.4
J
Analyzed about 5 hours ago
jME Physics System provides an interface between jME (Java Monkey Engine) and ODE (Open Dynamics Engine). It sits on top of a slightly modified version of odejava, and provides a way to very easily set up a physics world and add objects to it.
The jmephysics project was redesigned and emerged into a new project named jME Physics 2.
Licenses:
BSD-3-Clause
Terminology for Description of Dynamics
T
Analyzed about 2 hours ago
The TErminology for the Description of DYnamics (TEDDY) project aims to provide an ontology for dynamical behaviours, observable dynamical phenomena, and control elements of bio-models and biological systems in Systems Biology and Synthetic Biology.
Licenses:
No declared licenses
Robotics Library
Analyzed 1 day ago
The Robotics Library (RL) is a self-contained C++ library for rigid body kinematics and dynamics, motion planning, and control. It covers spatial vector algebra, multibody systems, hardware abstraction, path planning, collision detection, and visualization.
Licenses:
bsd_2clau...
matlab-toolboxes-robotics-vision
Analyzed about 23 hours ago
Robotics and Machine Vision Toolboxes for MATLAB