| setting path now system wide |
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over 15 years ago
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| AtomCache can now fetch Biological unit files and cache them locally. |
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over 15 years ago
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| demo how to show a structure in jmol |
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over 15 years ago
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| beginning to break out caching functionality from pdbfilereader |
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over 15 years ago
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| now with a debug flag |
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over 15 years ago
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| Added additional gradients to ScaleableMatrixPanel, and fixed a few bugs. |
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over 15 years ago
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| Removed unused imports |
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over 15 years ago
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| Removing the test package org/biojava/bio/structure/align/benchmark. |
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over 15 years ago
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| Added additional flexibility to fetching SCOP domains from an AtomCache. |
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over 15 years ago
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| Added tests for StructureTools.getSubRanges(String) for tough cases like insertion codes and negative residues, then fixed StructureTools so it passes. |
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over 15 years ago
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| adding center of mass calculation |
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over 15 years ago
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| adding center of mass calculation |
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over 15 years ago
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| Implemented fast distance method for speed improvements when calculating thousands plus distances. Tweaked StructureTools to give better H-Bonding results - this is now comparable to HBPlus/LigPlot/LPC Added a couple of more bond types to Bond. Corrected spelling mistake in ChemCompDescriptor toString() (wow serious stuff!) |
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over 15 years ago
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| Added circularity for locations |
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over 15 years ago
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| Added setLineSeperator(String line) to FastaWriter to allow user to set CRLF or LF. Currently using operating system line.separator |
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over 15 years ago
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| Section parser now accepts tags not followed by white space. |
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over 15 years ago
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| Fix ordering of sublocations on complementary strand |
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over 15 years ago
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| Continued minor improvements on bond type detection in StructureTools. Added modified residues to parser. |
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over 15 years ago
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| Minor improvements on bond type detection in StructureTools |
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over 15 years ago
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| Added a gradient selector to the top of dot plots |
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over 15 years ago
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| adding noargs constructure |
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over 15 years ago
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| now also printing Z-score if algo = CE |
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over 15 years ago
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| cleanup |
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over 15 years ago
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| adding biojava copyright |
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over 15 years ago
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| adding @since annotation |
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over 15 years ago
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| Adding new ChemCompDescriptor to ChemComps |
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over 15 years ago
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| Adding new ChemCompDescriptor to ChemComps |
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over 15 years ago
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| cleanup and fixing wrong imports |
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over 15 years ago
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| exposing more internals of CE. Can be used to modify how CE works. |
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over 15 years ago
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| Added functionality for selecting a set of Groups in a Structure within a given radius of a given Group. |
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over 15 years ago
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