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Analyzed 1 day ago. based on code collected 2 days ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Nov 05, 2025 — Nov 05, 2026 Showing page 203 of 243 Search / Filter on:
Added FeatureHelper which allows you to build indexes based on a feature attribute value. This is then used in GeneFeatureHelper when parsing a gmod gff3 file to quickly find the features that belong to a parent. Went from taking a very long time to load a genome fasta file and a gff3 file to now is very quick. GeneFeatureHelper is now using the FastaReaderHelper that loads a fasta file but proxies the sequence data on disk.	Scooter Willis	More...				almost 16 years ago
The length of ExonSequence,IntronSequence,CDSSequence etc who all have a parent was returning the length of the parent.	Scooter Willis	More...				almost 16 years ago
only using model 0 for NMRs...	Andreas Prlic	More...				almost 16 years ago
only using model 0 for NMRs...	Andreas Prlic	More...				almost 16 years ago
javadoc cleanup, removed some warnings	Andreas Prlic	More...				almost 16 years ago
make sure we only use model 0 for multi-model structures.	Andreas Prlic	More...				almost 16 years ago
cleanup of non UTF characters	Andreas Prlic	More...				almost 16 years ago
now depends on 3.0.1-SNAPSHOT	Andreas Prlic	More...				almost 16 years ago
cleanup of api	Andreas Prlic	More...				almost 16 years ago
fixing jmol script errors for single chain scop domains	Andreas Prlic	More...				almost 16 years ago
now can show SCOP and PDP domains	Andreas Prlic	More...				almost 16 years ago
now can show SCOP and PDP domains	Andreas Prlic	More...				almost 16 years ago
setting system parameter correctly now	Andreas Prlic	More...				almost 16 years ago
First version of an implementation of PDP for automatically suggesting domains in structures	Andreas Prlic	More...				almost 16 years ago
Working on removing old legacy BJ dust... Sequence interface used instead of RichSequence. I also included the import requests for DNASequence and ProteinSequence. I need to add the logic related to the matching of molecule class to blast program.	Sylvain Foisy	More...				almost 16 years ago
Working on removing old legacy BJ dust... Sequence interface used instead of RichSequence	Sylvain Foisy	More...				almost 16 years ago
now the demo also prints more info about the various scores	Andreas Prlic	More...				almost 16 years ago
better javadoc of scores	Andreas Prlic	More...				almost 16 years ago
Added support for UniprotProxySequenceReader to use any searchable index by changing to a query URL. Also will set the ProteinSequence AccessionID to the uniprot assigned name.	Scooter Willis	More...				almost 16 years ago
ChemComp now serializable	Andreas Prlic	More...				almost 16 years ago
now with support for Atom.toPDB	Andreas Prlic	More...				almost 16 years ago
now with support for Atom.toPDB	Andreas Prlic	More...				almost 16 years ago
now with support for Atom.toPDB	Andreas Prlic	More...				almost 16 years ago
Test was failing if the location was at 1 and negative strand because internally stored as 0 and you can't have negative 0	Scooter Willis	More...				almost 16 years ago
Test was failing if the location was at 1 and negative strand because internally stored as 0 and you can't have negative 0	Scooter Willis	More...				almost 16 years ago
[maven-release-plugin] prepare for next development iteration	Andreas Prlic	More...				almost 16 years ago
[maven-release-plugin] prepare release biojava-legacy-1.8	Andreas Prlic	More...				almost 16 years ago
[maven-release-plugin] prepare for next development iteration	Andreas Prlic	More...				almost 16 years ago
[maven-release-plugin] prepare release biojava-3.0	Andreas Prlic	More...				almost 16 years ago
working around the no-download chem comp provider.	Andreas Prlic	More...				almost 16 years ago

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