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Moderate Activity

Commits : Listings

Analyzed about 23 hours ago. based on code collected 2 days ago.
Nov 05, 2025 — Nov 05, 2026
Commit Message Contributor Files Modified Lines Added Lines Removed Code Location Date
new, also write tmScore, if available
Andreas Prlic
More... over 15 years ago
new toString, now also prints tmScore if available.
Andreas Prlic
More... over 15 years ago
[maven-release-plugin] prepare for next development iteration
Andreas Prlic
More... over 15 years ago
[maven-release-plugin] prepare release biojava-legacy-1.8.1
Andreas Prlic
More... over 15 years ago
[maven-release-plugin] prepare for next development iteration
Andreas Prlic
More... over 15 years ago
[maven-release-plugin] prepare release biojava-3.0.1
Andreas Prlic
More... over 15 years ago
git-svn-id: http://code.open-bio.org/repos/biojava/biojava-live/trunk@8749 7c6358e6-4a41-0410-a743-a5b2a554c398
Sylvain Foisy
More... over 15 years ago
small change in the toString method for nicer web site display
Andreas Prlic
More... over 15 years ago
the first compareTo did not test enough fields. Now testing all data of this complex object.
Andreas Prlic
More... over 15 years ago
Went one step better and checked that the REF line was actually of the expected length before parsing it in case people have badly formatted home-brew PDB files or something. Will now log a warning and and back an empty ref section.
JulesJacobsen
as Jules Jacobsen
More... over 15 years ago
Added exception handling for when the JournalParser tries to convert a date in the PDB JRNL REF subsection from a string to an int. This will now warn the user that there is an incorrect datatype instead of falling over.
JulesJacobsen
as Jules Jacobsen
More... over 15 years ago
cleanup, removing desription internal variable, since not used
Andreas Prlic
More... over 15 years ago
making comparable
Andreas Prlic
More... over 15 years ago
slightly different toString
Andreas Prlic
More... over 15 years ago
making Sites comparable
Andreas Prlic
More... over 15 years ago
Fix for http://bugzilla.open-bio.org/show_bug.cgi?id=3174
JulesJacobsen
as Jules Jacobsen
More... over 15 years ago
now also setting SITE records in reduced Structures
Andreas Prlic
More... over 15 years ago
now allowing to call scaleablematrixpanel for debugging
Andreas Prlic
More... over 15 years ago
correct specification of SVN base
Andreas Prlic
More... over 15 years ago
enabling javadocs
Andreas Prlic
More... over 15 years ago
catching some inconsistencies with some custom site records
Andreas Prlic
More... almost 16 years ago
biojava3-protmod: only merge modifications of the same type and with undefined category
Jianjiong Gao
More... almost 16 years ago
More info added for location of available databases to the URLAPI interface
Sylvain Foisy
More... almost 16 years ago
More info added for location of available databases to the URLAPI interface
Sylvain Foisy
More... almost 16 years ago
More info added for location of available databases to the URLAPI interface
Sylvain Foisy
More... almost 16 years ago
removing dependency on old biojava-core
Andreas Prlic
More... almost 16 years ago
fix for structures with more than 6 domains
Andreas Prlic
More... almost 16 years ago
adding check for max-size
Andreas Prlic
More... almost 16 years ago
Bug fixes plus new feature: sanity check for sequence to program matching. For example, blasting a ProteinSequence with blastn will return an Exception.
Sylvain Foisy
More... almost 16 years ago
Added fix for rare cases when there are more than 18 chains in a COMPND and chains after 72 character limit are omitted form the structure. Entries such as 3mk3 will no longer throw a StructureException due to being unable to find a chain when LinkChains2Compound() calls StructureImpl.findChain(). Test and test file included in commit.
JulesJacobsen
as Jules Jacobsen
More... almost 16 years ago