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Commits : Listings

Analyzed 1 day ago. based on code collected 3 days ago.
Sep 30, 2025 — Sep 30, 2026
Commit Message Contributor Files Modified Lines Added Lines Removed Code Location Date
I've submitted a patch to 2679. Please have a look and see if you like it. More... almost 17 years ago
Hi, More... almost 17 years ago
adding new utility methods for cloning Atoms More... almost 17 years ago
now allows to trace alignment score More... almost 17 years ago
tracking the alignment score now More... almost 17 years ago
provide external access to interal SimpleAlignment More... almost 17 years ago
declaring all methods as final and adding an Atom-> String conversion utility method More... almost 17 years ago
user interface improvements for structure alignment display More... almost 17 years ago
Patch by Carl Masak to make amino acid matcher non-case-sensitive. More... almost 17 years ago
adding support for showing one or two boxes. (one box for DB searches) More... almost 17 years ago
added support for prototypes More... almost 17 years ago
removed print statement More... almost 17 years ago
adding new utility method to access reduced PDBs by chain position More... almost 17 years ago
new method to extract sub-ranges More... almost 17 years ago
small refactoring - moving getReducedStructure to StructureTools More... almost 17 years ago
reducing memory requirement More... almost 17 years ago
adding SCM config More... almost 17 years ago
adding support for generating javadoc More... almost 17 years ago
Bug fix & Test for RichLocation.Tools.merge More... almost 17 years ago
checking upper case chain ID if lower case is not found in file More... almost 17 years ago
allows outside access to JMatrixPanel More... almost 17 years ago
fixing a problem when downloading PDB files on windows OS. More... almost 17 years ago
Removed code redundancy More... almost 17 years ago
Fix restriction enzyme overhangs and upstream cutsites. More... almost 17 years ago
Change synchronization level to a private lock on getChangeSupport method More... almost 17 years ago
Fix RichLocation.Tool.construct(Collection<Location> members) for members size==1 More... almost 17 years ago
Fix versions in POM More... almost 17 years ago
fixes for some bugs I introduces yesterday and that had to do with incorrectly building up the chains. Added several new junit tests to make sure this gets checked from now on. More... almost 17 years ago
adding support for only parsing Header records, ignoring Atom records. More... almost 17 years ago
better access to underlying data structures of the alignments More... almost 17 years ago