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Commits : Listings

Analyzed about 18 hours ago. based on code collected 1 day ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Oct 02, 2025 — Oct 02, 2026 Showing page 238 of 243 Search / Filter on:
Moved this to parsers	Andy Yates	More...				over 16 years ago
Starts are defined by M not * (as in something which will act like a M)	Andy Yates	More...				over 16 years ago
Modified this slightly to remove blank lines & to delim each record with a // (makes parsing a lot easier)	Andy Yates	More...				over 16 years ago
Adding documentation	Andy Yates	More...				over 16 years ago
Adding the codon table parser	Andy Yates	More...				over 16 years ago
FASTA Parser code and required changes	Scooter Willis	More...				over 16 years ago
FASTA Parser code and required changes	Scooter Willis	More...				over 16 years ago
Adding the basic IUPAC codon code	Andy Yates	More...				over 16 years ago
Adding the translation table stuff	Andy Yates	More...				over 16 years ago
FASTA Parser code and required changes	Scooter Willis	More...				over 16 years ago
Removing maven touched file	Andy Yates	More...				over 16 years ago
Adding support for reversing & complementing as sequence views. Sequence views fixed WRT offset bug. Adding google-collections as a dependency. Adding ambiguity symbols & improving the abstract compound set. Allowing access to the compound set a sequence was built with as a public method.	Andy Yates	More...				over 16 years ago
FASTA Parser code and required changes	Scooter Willis	More...				over 16 years ago
dealing correctly with CSE groups	Andreas Prlic	More...				over 16 years ago
Fiddled with alternative names for non-standard amino acids - will now return the correct 1-letter code for selenocysteine and pyrrolysine for both the PDB and IUBMB 3-letter codes.	JulesJacobsen as Jules Jacobsen	More...				over 16 years ago
returning 0 for unknown alignment pair	Andreas Prlic	More...				over 16 years ago
adding javadoc	Andreas Prlic	More...				over 16 years ago
now also considering chem. modified residues	Andreas Prlic	More...				over 16 years ago
trying to fix a problem with SEC residues	Andreas Prlic	More...				over 16 years ago
fixing test files	Andreas Prlic	More...				over 16 years ago
Added non-standard amino acid code test (1fdo) and corrected PDB HET codes for these.	JulesJacobsen as Jules Jacobsen	More...				over 16 years ago
Initial check in of biojava interface to forester library	Scooter Willis	More...				over 16 years ago
new CE demo	Andreas Prlic	More...				over 16 years ago
Fixed 'MSE' reporting by parser and removed dependency on BioJava Sequence and Core modules for parsing PDB files.	JulesJacobsen as Jules Jacobsen	More...				over 16 years ago
git-svn-id: http://code.open-bio.org/repos/biojava/biojava-live/trunk@7380 7c6358e6-4a41-0410-a743-a5b2a554c398	Scooter Willis	More...				over 16 years ago
git-svn-id: http://code.open-bio.org/repos/biojava/biojava-live/trunk@7379 7c6358e6-4a41-0410-a743-a5b2a554c398	Scooter Willis	More...				over 16 years ago
git-svn-id: http://code.open-bio.org/repos/biojava/biojava-live/trunk@7376 7c6358e6-4a41-0410-a743-a5b2a554c398	Jonathan Warren	More...				over 16 years ago
updated to List interface instead of []s and Capabilities Enum	Jonathan Warren	More...				over 16 years ago
incremental progress on selections	Andreas Prlic	More...				over 16 years ago
git-svn-id: http://code.open-bio.org/repos/biojava/biojava-live/trunk@7371 7c6358e6-4a41-0410-a743-a5b2a554c398	Jonathan Warren	More...				over 16 years ago

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