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Analyzed 1 day ago. based on code collected 2 days ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Nov 05, 2025 — Nov 05, 2026 Showing page 182 of 243 Search / Filter on:
adding more details for SIFTs	Andreas Prlic	More...				over 14 years ago
fixing some details about sifts parsing	Andreas Prlic	More...				over 14 years ago
new framework for parsing EBI SIFTS files which provide PDB to UniProt mappings	Andreas Prlic	More...				over 14 years ago
added another method to QualityFeature; also some javadoc	Hannes Brandstätter-Müller	More...				over 14 years ago
implemented a new Fastq Reader/Writer for the new Illumina Fastq Formatting (according to Wikipedia it's version 1.8, new this month extended the Fastq class to be able to generate DNASequence representations with the Quality (as Phred Numbers) added as Feature extended the Fastq class to have a contructor that accepts a DNASequence some test cases code formatting	Hannes Brandstätter-Müller	More...				over 14 years ago
fixed a typo in QualityFeature	Hannes Brandstätter-Müller	More...				over 14 years ago
added a QualityFeature to hold quality information in DNASequences	Hannes Brandstätter-Müller	More...				over 14 years ago
better error catching for downloads	Andreas Prlic	More...				over 14 years ago
unified indentation in pom.xml; added some Test cases for DNA Alignments	Hannes Brandstätter-Müller	More...				over 14 years ago
now uses the new FileDownload utility class	Andreas Prlic	More...				over 14 years ago
new utility class for downloading content from URLs to Files	Andreas Prlic	More...				over 14 years ago
less verbose	Andreas Prlic	More...				over 14 years ago
Adjustment to Entrez update to EFetch 2.0	George Waldon	More...				over 14 years ago
disabling 3H5R from unit test for now.	Andreas Prlic	More...				over 14 years ago
make sure we are replaceing old files	Andreas Prlic	More...				over 14 years ago
more clear message if something goes wrong	Andreas Prlic	More...				over 14 years ago
NCBIQBlastService replaced with the new implementation. (For usage example see NCBIQBlastServiceDemo)	Gediminas Rimsa	More...				over 14 years ago
making sure the max thresholds are set before we start parsing	Andreas Prlic	More...				over 14 years ago
making sure the MAX parameters are set correctly	Peter Rose	More...				over 14 years ago
tiny cleanup	Andreas Prlic	More...				over 14 years ago
added a small note to javadoc	Amr AL-HOSSARY	More...				over 14 years ago
adding patch from Hannes	Andreas Prlic	More...				over 14 years ago
correct null check if file does not exist locally	Andreas Prlic	More...				over 14 years ago
fixing broken altLoc parsing https://redmine.open-bio.org/issues/3307	Andreas Prlic	More...				over 14 years ago
unit test for https://redmine.open-bio.org/issues/3307	Andreas Prlic	More...				over 14 years ago
much faster way of downloading biol. unit files	Andreas Prlic	More...				over 14 years ago
small code modification & comment	Amr AL-HOSSARY	More...				almost 15 years ago
removing unnecessary .append("") statements	Amr AL-HOSSARY	More...				almost 15 years ago
updated ignore list	Amr AL-HOSSARY	More...				almost 15 years ago
new gradient	Andreas Prlic	More...				almost 15 years ago

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