| Bug fixes regarding structural alignment: |
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almost 15 years ago
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| Refactored and cleaned up CeCPMain. No functional changes. |
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almost 15 years ago
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| Removed OptimalCECPMain from the StructureAlignmentFactory (and therefore the GUI). |
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almost 15 years ago
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| better proxying of data |
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almost 15 years ago
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| code cleanup |
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almost 15 years ago
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| prevent an out of index error |
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almost 15 years ago
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| now tracks if alignment is circularly permuted |
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almost 15 years ago
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| now fetching all domains for representatives in one go |
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almost 15 years ago
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| not caching NULL values |
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almost 15 years ago
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| not caching NULL values |
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almost 15 years ago
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| add test cases for cookbook |
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about 15 years ago
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| setting correct paths for farm jobs. |
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about 15 years ago
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| more transparent logging |
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about 15 years ago
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| now also flushing scopDescriptionCache |
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about 15 years ago
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| updating to latest file format |
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about 15 years ago
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| flush and cleanup memory of caches at shutdown |
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about 15 years ago
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| now also tracking time it took for calculation |
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about 15 years ago
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| now also tracking time it took for calculation |
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about 15 years ago
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| now also tracking time it took for calculation |
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about 15 years ago
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| using new cachedremotescop |
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about 15 years ago
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| Improved speed and caching behavior with new CachedRemoteScopInstallation |
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about 15 years ago
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| Improved speed and caching behavior with new CachedRemoteScopInstallation |
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about 15 years ago
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| catching nullpointer exception if alignment is too short. |
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about 15 years ago
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| removing TmpAtomCache |
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about 15 years ago
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| Deprecating TmpAtomCache. We don't need a special helper class for unit tests anymore. |
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about 15 years ago
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| Added AlignmentTools.isSequentialAlignment(), which detects if an AFPChain is sequential (vs. permuted). |
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about 15 years ago
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| Fix Bug #3305 for not closing open file |
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about 15 years ago
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| switching service provider |
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about 15 years ago
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| switching service provider |
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about 15 years ago
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| now valid XML |
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about 15 years ago
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