| fix a few stragglers |
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over 14 years ago
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| moving files to correct place, svn copy from biojava-legacy/trunk was incorrect |
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over 14 years ago
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| refactoring package names, updating @since tags; will have to svn move files next, svn copied them to wrong place |
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over 14 years ago
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| updating to version 3.0.3-SNAPSHOT |
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over 14 years ago
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| re-merging src/test/java from biojava-legacy/trunk to biojava-live/trunk |
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over 14 years ago
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| re-merging src/test/java from biojava-legacy/trunk to biojava-live/trunk |
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over 14 years ago
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| re-merging src/main from biojava-legacy/trunk to biojava-live/trunk |
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over 14 years ago
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| re-merging pom.xml from biojava-legacy/trunk to biojava-live/trunk |
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over 14 years ago
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| re-adding biojava3-sequencing module to prepare for svn copy operations from biojava-legacy/trunk |
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over 14 years ago
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| rolling back previous commit, not certian maven-release-plugin can handle an inherited version |
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over 14 years ago
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| undid more unnecessary reformatting that made the code harder to read in the Fastq test cases, also removed some unnecessary import statements |
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over 14 years ago
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| undid some unnecessary reformatting that made the code harder to read in FastqBuilderTest.java |
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over 14 years ago
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| moved fastq classes from biojava3.sequencing.io.fastq to biojava3.genome.parsers.fastq |
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over 14 years ago
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| minor style fix |
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over 14 years ago
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| increasing unit test coverage |
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over 14 years ago
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| minor style fixes |
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over 14 years ago
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| refactor qualityScores and errorProbabilites to return Iterable<Number> to match cookbook examples |
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over 14 years ago
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| adding unit test for FastqTools, restricting createPhredSequence and createSymbolDistribution to Sanger variant only |
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over 14 years ago
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| fix for bug uncovered by unit test for FastqTools |
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over 14 years ago
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| minor javadoc fixes |
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over 14 years ago
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| fix @since tags, version 1.9 --> 1.8.2 |
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over 14 years ago
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| major performance improvements for FASTQ support; adding new low-level and event based parsers, adding FastqTools for common conversions, and adding compile scope dependency on guava version 11.0.1 |
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over 14 years ago
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| added sanity check to Alignments, throws IllegalArgumentException if compound sets mismatch (instead of just failing silently) |
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over 14 years ago
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| Improved documentation |
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over 14 years ago
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| Added CECP test for short CECP alignments |
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over 14 years ago
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| Updating PDBFIleParser test to new Element symbol in toPDB method |
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over 14 years ago
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| converting ELement R to X |
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over 14 years ago
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| Bugfix: Short alignment blocks (<5 residues) will be ignored by CECP |
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over 14 years ago
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| adding Element name toPDB method |
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over 14 years ago
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| parser now ignores empty lines |
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over 14 years ago
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