| junit test for https://redmine.open-bio.org/issues/3334 |
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over 14 years ago
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| fix for https://redmine.open-bio.org/issues/3334 |
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over 14 years ago
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| Added DemoAlignmentFromFasta, to show how to read a structural alignment from a fasta file. |
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over 14 years ago
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| Removing debugging output. |
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over 14 years ago
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| Added AlignmentTools.createAFPChain, which makes an AFPChain from a list of aligned ResidueNumbers. |
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over 14 years ago
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| javadoc fixes, incorrect @param --> @throws |
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over 14 years ago
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| javadoc fixes, incorrect @param --> @throws |
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over 14 years ago
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| Added DemoStructureFromFasta. |
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over 14 years ago
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| Added StructureSequenceMatcher, which matches sequences to structures. Added FastaStructureParser, which reads protein structures from FASTA files |
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over 14 years ago
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| Adding CasePreservingProteinSequenceCreator, which stores the case of the input string in the ProteinSequence user collection |
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over 14 years ago
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| [maven-release-plugin] prepare for next development iteration |
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over 14 years ago
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| [maven-release-plugin] prepare release biojava-legacy-1.8.2 |
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over 14 years ago
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| rolling back previous commit; maven release:perform hangs at [deploy:deploy] step |
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over 14 years ago
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| rolling back previous commit; maven release:perform hangs at [deploy:deploy] step |
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over 14 years ago
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| [maven-release-plugin] prepare for next development iteration |
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over 14 years ago
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| [maven-release-plugin] prepare release biojava-legacy-1.8.2 |
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over 14 years ago
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| rolling back previous commit; maven release:prepare failed due to svn username problems |
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over 14 years ago
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| [maven-release-plugin] prepare release biojava-legacy-1.8.2 |
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over 14 years ago
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| rolling back previous commit; maven release:prepare failed due to svn username problems |
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over 14 years ago
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| [maven-release-plugin] prepare release biojava-legacy-1.8.2 |
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over 14 years ago
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| [maven-release-plugin] prepare for next development iteration |
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over 14 years ago
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| [maven-release-plugin] prepare release biojava-3.0.3 |
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over 14 years ago
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| remove empty package directories |
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over 14 years ago
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| previous commit, "deleted genome.parsers.fastq and associated test classes (duplicated, they are in their own package, sequencing)" missed removing unit tests |
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over 14 years ago
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| artifactId should be biojava3-sequencing |
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over 14 years ago
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| deleted genome.parsers.fastq and associated test classes (duplicated, they are in their own package, sequencing) |
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over 14 years ago
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| adding javadoc comments, increasing unit test coverage |
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over 14 years ago
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| refactor createQuality --> createQualityScores |
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over 14 years ago
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| adding a few new untested utility methods for review |
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over 14 years ago
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| moving parse and stream methods from AbstractFastqReader to FastqReader, since binary compatibility is not a concern for biojava3, where these are new APIs |
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over 14 years ago
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