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Analyzed 1 day ago. based on code collected 2 days ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Nov 05, 2025 — Nov 05, 2026 Showing page 178 of 243 Search / Filter on:
now correctly print all of the DB search column headers	Andreas Prlic	More...				over 14 years ago
small cleanup	Andreas Prlic	More...				over 14 years ago
making sure to write the algorithm name to the output file	Andreas Prlic	More...				over 14 years ago
patch for https://redmine.open-bio.org/issues/3362	Andreas Prlic	More...				over 14 years ago
adding check for null	Andreas Prlic	More...				over 14 years ago
fixed bug in getOneLetterCode. It was returning "?" in some cases (i.e., for YNM in PDB 2WS6), now it always returns X for any non-standard residue.	Peter Rose	More...				over 14 years ago
allows more manipulation of jmol from the outside...	Andreas Prlic	More...				over 14 years ago
better javadoc	Andreas Prlic	More...				over 14 years ago
Demo how to access the biological assembly of a protein	Andreas Prlic	More...				over 14 years ago
adding a new unit test for the StructureIO class	Andreas Prlic	More...				over 14 years ago
adding a new StructureIO class for easy access to structure related methods. Behavior for the framework can be configured via factories. Starting to add a new factory interface for accessing biological units from either mmCif files or via webservices.	Andreas Prlic	More...				over 14 years ago
switching the json library according to request from Olivier Sallou	Andreas Prlic	More...				over 14 years ago
adding new field	Andreas Prlic	More...				over 14 years ago
adding missing sub-module dependencies	Andreas Prlic	More...				over 14 years ago
moving slow running junit tests to new integrationtest module. They can be called by using mvn verify	Andreas Prlic	More...				over 14 years ago
moving slow running junit tests to new integrationtest module. They can be called by using mvn verify	Andreas Prlic	More...				over 14 years ago
moving slow running junit tests to new integrationtest module. They can be called by using mvn verify	Andreas Prlic	More...				over 14 years ago
moving slow running junit tests to new integrationtest module. They can be called by using mvn verify	Andreas Prlic	More...				over 14 years ago
moving slow running junit tests to new integrationtest module. They can be called by using mvn verify	Andreas Prlic	More...				over 14 years ago
moving slow running junit tests to new integrationtest module. They can be called by using mvn verify	Andreas Prlic	More...				over 14 years ago
moving slow running junit tests to new integrationtest module. They can be called by using mvn verify	Andreas Prlic	More...				over 14 years ago
moving slow running tests to new integrationtest module	Andreas Prlic	More...				over 14 years ago
moving slow running tests to new integrationtest module	Andreas Prlic	More...				over 14 years ago
moving slow running tests to new integrationtest module	Andreas Prlic	More...				over 14 years ago
Adding a new integration test module that can run slow-running tests. It can be called by using mvn verify	Andreas Prlic	More...				over 14 years ago
BioJava now can reconstruct the quaternary structures of proteins! So far only works when using mmCif files as a source.	Andreas Prlic	More...				over 14 years ago
fixing eclipse warnings	Andreas Prlic	More...				over 14 years ago
adding support for storing internal chain ids, as are being used in mmCif files	Andreas Prlic	More...				over 14 years ago
Changed behavior of getSeqResSequence to always add an "X" for non-standard residues in the SEQRES record of a PDB file. So now the one-letter sequence matches the length of the SEQRES record in a PDB file.	Peter Rose	More...				over 14 years ago
fixing typo	Andreas Prlic	More...				over 14 years ago

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