14
I Use This!
Moderate Activity

Commits : Listings

Analyzed 1 day ago. based on code collected 2 days ago.
Nov 05, 2025 — Nov 05, 2026
Commit Message Contributor Files Modified Lines Added Lines Removed Code Location Date
setting description for domain ranges More... about 15 years ago
setting description for SCOP domain based structures. More... about 15 years ago
set description in AFP chain More... about 15 years ago
update to new protocol for running large scale calculations with various algorithm names. More... about 15 years ago
less verbose More... about 15 years ago
Made SeqRes2AtomAligner#getFullAtomSequence static.
sbliven
as Spencer Bliven
More... about 15 years ago
Improved parsing of older SCOP versions.
sbliven
as Spencer Bliven
More... about 15 years ago
Minor documentation changes
sbliven
as Spencer Bliven
More... about 15 years ago
Added some documentation to functions that take 1-based indices, although there are definitely more which need documentation.
sbliven
as Spencer Bliven
More... about 15 years ago
Added the ability to fetch AminoAcidCompounds by 3 letter names
sbliven
as Spencer Bliven
More... about 15 years ago
slowly starting to break this up in two classes - a UI class and a class for doing the actual DB scan. More... about 15 years ago
making many fields protected so they can be accessed by extending classes. More... about 15 years ago
new unit test for DNA alignments More... about 15 years ago
adding a unit test that aligns a DNA sequence More... about 15 years ago
Added missing intra-package import (Thanks to Hannes Brandstätter-Müller)
sbliven
as Spencer Bliven
More... about 15 years ago
Added new constructor for RestrictionMapper using java.util.concurrent.ExecutorService More... about 15 years ago
less verbose More... about 15 years ago
adding javascript More... about 15 years ago
update to latest version of AtomCache name conventions More... about 15 years ago
tracking a short description of the 2nd protein More... about 15 years ago
Added equals() and hashCode() methods to AFPChain. The methods do not test all properties extensively, but rather test for equality of the core alignment represented by an AFPChain.
sbliven
as Spencer Bliven
More... about 15 years ago
now supports loading from a URL - for webstart More... about 15 years ago
now supports loading from a URL - for webstart More... about 15 years ago
adding support for description column More... about 15 years ago
adding support for description column More... about 15 years ago
adding support for description column More... about 15 years ago
setting description of Structure More... about 15 years ago
now writing some of the CE parameters into output files More... about 15 years ago
now writing some of the CE parameters into output files More... about 15 years ago
more informative exception More... about 15 years ago