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Analyzed about 17 hours ago. based on code collected 2 days ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Nov 05, 2025 — Nov 05, 2026 Showing page 221 of 243 Search / Filter on:
biojava3-protmod: Collections.singletonList for 1-element list; Return empty collection instead of null.	Jianjiong Gao	More...				over 16 years ago
minor: use interface as type	Mark Chapman	More...				over 16 years ago
biojava3-protmod: check more carefully on the linkages.	Jianjiong Gao	More...				over 16 years ago
updates	Mark Chapman	More...				over 16 years ago
biojava3-protmod: remove ModificationLinkage.	Jianjiong Gao	More...				over 16 years ago
tests	Mark Chapman	More...				over 16 years ago
global pairwise alignment algorithm implementation	Mark Chapman	More...				over 16 years ago
updates	Mark Chapman	More...				over 16 years ago
alignment data structures implementation	Mark Chapman	More...				over 16 years ago
updates	Mark Chapman	More...				over 16 years ago
biojava3-protmod: more modifications were added.	Jianjiong Gao	More...				over 16 years ago
biojava3-protmod: add isopeptide bonds.	Jianjiong Gao	More...				over 16 years ago
biojava3-protmod: merging parser for 3 cases into 1.	Jianjiong Gao	More...				over 16 years ago
biojava3-protmod: allowing multiple entries for each pdbcc id, resid id, or psi-mod id.	Jianjiong Gao	More...				over 16 years ago
biojava3-protmod: condition as required parameter in ProteinModfication. setter in Builder.	Jianjiong Gao	More...				over 16 years ago
biojava3-protmod: more tests.	Jianjiong Gao	More...				over 16 years ago
tests	Mark Chapman	More...				over 16 years ago
updates	Mark Chapman	More...				over 16 years ago
documentation comments	Mark Chapman	More...				over 16 years ago
substitution matrix implementation	Mark Chapman	More...				over 16 years ago
biojava3-protmod: rename AtomBond to ModificationLinkage.	Jianjiong Gao	More...				over 16 years ago
biojava3-protmod: more protein modifications.	Jianjiong Gao	More...				over 16 years ago
now using new cache	Andreas Prlic	More...				over 16 years ago
adding tmp cache for junit tests	Andreas Prlic	More...				over 16 years ago
now exposing alignSeqRes flag	Andreas Prlic	More...				over 16 years ago
Ensuring sub sequence returns the correct length	Andy Yates	More...				over 16 years ago
Subs which exceed the bounds of the sequence are now no longer allowed; they are a separate sub & insert process	Andy Yates	More...				over 16 years ago
biojava3-protmod: more modifications were added.	Jianjiong Gao	More...				over 16 years ago
biojava3-protmod: remove debug messages	Jianjiong Gao	More...				over 16 years ago
gap penalty implementation	Mark Chapman	More...				over 16 years ago

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