BioJava

Settings | Report Duplicate

14

I Use This!

Moderate Activity

Commits : Listings

Analyzed 1 day ago. based on code collected 2 days ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Nov 05, 2025 — Nov 05, 2026 Showing page 220 of 243 Search / Filter on:
biojava3-protmod: check RESID id of the identified modifications in test.	Jianjiong Gao	More...				over 16 years ago
biojava3-protmod: check atom label.	Jianjiong Gao	More...				over 16 years ago
biojava3-protmod: bring back ModificationLinkage; add label for atoms.	Jianjiong Gao	More...				over 16 years ago
added guide tree formation, alternate scorers, and proper thread pool shutdown	Mark Chapman	More...				over 16 years ago
additional pairwise sequence scorers	Mark Chapman	More...				over 16 years ago
Location refactoring	Mark Chapman	More...				over 16 years ago
biojava3-protmod: code change according to changes in structure module.	Jianjiong Gao	More...				over 16 years ago
biojava3-protmod: unknown atom, search for all.	Jianjiong Gao	More...				over 16 years ago
biojava3-protmod: multiple potential atoms for each end of a linkage. This is a tentative solution for symmetric structures.	Jianjiong Gao	More...				over 16 years ago
biojava3-protmod: more modifications.	Jianjiong Gao	More...				over 16 years ago
First pass implementation of locations in the new biojava. Not feature complete and no parsers/writers but is a good first attempt	Andy Yates	More...				over 16 years ago
factory methods	Mark Chapman	More...				over 16 years ago
test files	Mark Chapman	More...				over 16 years ago
biojava3-protmod: different types of Components can have same name now; more modifications	Jianjiong Gao	More...				over 16 years ago
biojava3-protmod: more modifications.	Jianjiong Gao	More...				over 16 years ago
parallel/lazy/concurrent execution utility and use for global pairwise sequence alignments	Mark Chapman	More...				over 16 years ago
biojava3-protmod: multiple linkages between to components/groups; more modifications.	Jianjiong Gao	More...				over 16 years ago
small cleanup for better consistency	Andreas Prlic	More...				over 16 years ago
adding SSBonds and DBref to utility method	Andreas Prlic	More...				over 16 years ago
new utility method to deal with PDB residue numbering and insertion codes	Andreas Prlic	More...				over 16 years ago
support for config of new parameters	Andreas Prlic	More...				over 16 years ago
New FileParsingParameter class	Andreas Prlic	More...				over 16 years ago
New FileParsingParameter class	Andreas Prlic	More...				over 16 years ago
minor: use singleton	Mark Chapman	More...				over 16 years ago
tests	Mark Chapman	More...				over 16 years ago
moved boiler plate code into abstract class	Mark Chapman	More...				over 16 years ago
simplified defaults (loads blosum62)	Mark Chapman	More...				over 16 years ago
simplified defaults	Mark Chapman	More...				over 16 years ago
minor: privatize fields	Mark Chapman	More...				over 16 years ago
tests	Mark Chapman	More...				over 16 years ago

←
1
2
…
216
217
218
219
220
221
222
223
224
…
242
243
→