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Analyzed 1 day ago. based on code collected 3 days ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Nov 05, 2025 — Nov 05, 2026 Showing page 224 of 243 Search / Filter on:
rename module biojava3-ptm to biojava3-protmod and corresponding packages.	Jianjiong Gao	More...				over 16 years ago
biojava3-ptm: doc improvement.	Jianjiong Gao	More...				over 16 years ago
biojava3-ptm: Unit testing ProteinModification class and XML file registration.	Jianjiong Gao	More...				over 16 years ago
biojava3-ptm: lazy initialization of modifications.	Jianjiong Gao	More...				over 16 years ago
biojava3-ptm: re-structure the package to org.biojava3.	Jianjiong Gao	More...				over 16 years ago
biojava3-ptm: read protein modification from XML.	Jianjiong Gao	More...				over 16 years ago
biojava3-ptm: labels for ModificationCategory and ModificationOccurrenceType; Matrix for atoms.	Jianjiong Gao	More...				over 16 years ago
biojava3-ptm: pom.xml update; crosslink1...7	Jianjiong Gao	More...				over 16 years ago
biojava3-ptm: interfaces for 3 cases of PTMs.	Jianjiong Gao	More...				over 16 years ago
BioJava3-PTM: package refactoring	Jianjiong Gao	More...				over 16 years ago
BioJava3-PTM: XML update; add cross-links.	Jianjiong Gao	More...				over 16 years ago
BioJava3-PTM: remove constraint on number of components and atoms; improve doc.	Jianjiong Gao	More...				over 16 years ago
PTM list in XML file; ProteinModification class.	Jianjiong Gao	More...				over 16 years ago
just removed sequence-dna, code has been refactored out	Andreas Prlic	More...				over 16 years ago
removing refactored code that is obsolete now	Andreas Prlic	More...				over 16 years ago
now shorter...	Andreas Prlic	More...				over 16 years ago
minor change: removed user-specific path from DotPlotPanel	sbliven as Spencer Bliven	More...				over 16 years ago
bug fix for flipping of short alignments	Andreas Prlic	More...				over 16 years ago
printing warning if a position can;t be matched	Andreas Prlic	More...				over 16 years ago
allowing access to some methods in unit test	Andreas Prlic	More...				over 16 years ago
making sure chem comp are not use by default	Andreas Prlic	More...				over 16 years ago
making sure chem comp are not use by default	Andreas Prlic	More...				over 16 years ago
more an quicker server tests	Andreas Prlic	More...				over 16 years ago
now testing more algorithms	Andreas Prlic	More...				over 16 years ago
demo for how to run a web start client	Andreas Prlic	More...				over 16 years ago
udpated XML serialization	Andreas Prlic	More...				over 16 years ago
now check RMSDs of flipped alignments to make sure the shift is correctly calculated.	Andreas Prlic	More...				over 16 years ago
workaround for new Shift calculation.	Andreas Prlic	More...				over 16 years ago
fixed problem in unit test with new style of XML serialization.	Andreas Prlic	More...				over 16 years ago
vectors have to be tested differently now	Andreas Prlic	More...				over 16 years ago

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