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Analyzed about 20 hours ago. based on code collected 2 days ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Nov 05, 2025 — Nov 05, 2026 Showing page 227 of 243 Search / Filter on:
adding CE CP to user interface	Andreas Prlic	More...				over 16 years ago
adding sanity check for alignment size	Andreas Prlic	More...				over 16 years ago
adding sanity check for alignment size	Andreas Prlic	More...				over 16 years ago
Major check in of Biojava3-genome	Scooter Willis	More...				over 16 years ago
Some fairly major changes in both names to have a better description and parent/child relationships of classes.	Scooter Willis	More...				over 16 years ago
small fix for alignments without results (e.g. DNA alignments)	Andreas Prlic	More...				over 16 years ago
new unit test for DNA related alignments, they should not crash with an exception	Andreas Prlic	More...				over 16 years ago
new unit test for DNA related alignments, they should not crash with an exception	Andreas Prlic	More...				over 16 years ago
ignoring errors in alignment if HETATOMS...	Andreas Prlic	More...				over 16 years ago
fixed some minor mismatches	Andreas Prlic	More...				over 16 years ago
Improved the Smith-Waterman benchmark	sbliven as Spencer Bliven	More...				over 16 years ago
Fixed: A couple parameters from sequence alignments where incorrectly copied to AFPChain in SmithWaterman3Daligner	sbliven as Spencer Bliven	More...				over 16 years ago
making sure to refer to Calpha atoms by fullname	Andreas Prlic	More...				over 16 years ago
fixing a rotation problem	Andreas Prlic	More...				over 16 years ago
cleanup warning	Andreas Prlic	More...				over 16 years ago
now with support for coloring multi blocks	Andreas Prlic	More...				over 16 years ago
making sure to refer to Calpha atoms by fullname	Andreas Prlic	More...				over 16 years ago
making sure to refer to Calpha atoms by fullname	Andreas Prlic	More...				over 16 years ago
making sure to refer to Calpha atoms by fullname	Andreas Prlic	More...				over 16 years ago
making sure to refer to Calpha atoms by fullname	Andreas Prlic	More...				over 16 years ago
fixing a +/- 1 error	Andreas Prlic	More...				over 16 years ago
now making sure not to return Calcium's when Calpha atoms are requested	Andreas Prlic	More...				over 16 years ago
now making sure not to return Calcium's when Calpha atoms are requested	Andreas Prlic	More...				over 16 years ago
Bringing the checksum code into biojava3	Andy Yates	More...				over 16 years ago
Adding some more documentation	Andy Yates	More...				over 16 years ago
Renaming an old interface to describe anything which can complement not just NucleotideCompound instances	Andy Yates	More...				over 16 years ago
Renaming an old interface to describe anything which can complement not just NucleotideCompound instances	Andy Yates	More...				over 16 years ago
Adding more methods to SequenceMixin which means we can move more code out of the Sequence classes. There is also a SequenceIterator and SubSequence view object which is delegated to in-favour of writing ad-hoc anonymous classes. This also bugfixes the ReversedSequenceView and ComplementSequenceView; both of which had broken implementations of the iterator and sub sequence methods.	Andy Yates	More...				over 16 years ago
now with support to upload to biojava maven repository	Andreas Prlic	More...				over 16 years ago
now with support to upload to biojava maven repository	Andreas Prlic	More...				over 16 years ago

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