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Analyzed about 14 hours ago. based on code collected 1 day ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Oct 31, 2025 — Oct 31, 2026 Showing page 230 of 243 Search / Filter on:
more docu for javaws.jar	Andreas Prlic	More...				over 16 years ago
no need to keep docu for astex at the moment	Andreas Prlic	More...				over 16 years ago
fixing unit test, now it passes	Andreas Prlic	More...				over 16 years ago
disabling prototype-fail	Andreas Prlic	More...				over 16 years ago
disabling prototype-fail	Andreas Prlic	More...				over 16 years ago
disabling Astex for now until we can host it on a public MVN server	Andreas Prlic	More...				over 16 years ago
test speedup and prevent auto-failing	Andreas Prlic	More...				over 16 years ago
disabling Astex for now until we can host it on a public MVN server	Andreas Prlic	More...				over 16 years ago
Commit to solve compile problems per andreas	Scooter Willis	More...				over 16 years ago
updating to latest status	Andreas Prlic	More...				over 16 years ago
Commit to solve compile problems per andreas	Scooter Willis	More...				over 16 years ago
Commit to solve compile problems per andreas	Scooter Willis	More...				over 16 years ago
adding tm-Score	Andreas Prlic	More...				over 16 years ago
Improving tests. We now check for a bad location creation. GC tests are live. WindowView tests now checks when we have sequence overhang that we ignore it	Andy Yates	More...				over 16 years ago
New GC stats using the SequenceUtils class	Andy Yates	More...				over 16 years ago
Now introduced the count compounds method. The main usage is GC counts but this allows us to do it for any compound in any sequence.	Andy Yates	More...				over 16 years ago
Now uses the IOUtils class more	Andy Yates	More...				over 16 years ago
More docs	Andy Yates	More...				over 16 years ago
Class of static imports used to supplement sequence objects when inheritence will not work properly.	Andy Yates	More...				over 16 years ago
Documentation improvement	Andy Yates	More...				over 16 years ago
Documentation improvement	Andy Yates	More...				over 16 years ago
Documentation improvement. isStart() now looks through all start codons and sees if the amino acid given could have been coded by it. First time it hits one it returns true.	Andy Yates	More...				over 16 years ago
Adding new methods to allow automatic GZip switching. More methods for working with IO streams in different formats. Also allowing Classpath resources to be GZiped.	Andy Yates	More...				over 16 years ago
Import cleanup. Warning suppression. Addition of generics to example main	Andy Yates	More...				over 16 years ago
Adding the generics to the reader main example	Andy Yates	More...				over 16 years ago
Sense has been removed from Transcript and replaced by the Strand enum which is a top level enum. This is used in all Strand related cases which I hope will be seen as the same thing as Sense. We can rename but a top level enum makes more sense	Andy Yates	More...				over 16 years ago
Fixed a IllegalIndex bug where AFPChain block lengths were being ignored. Updated AlignBenchmark to support more alignment algorithms.	sbliven as Spencer Bliven	More...				over 16 years ago
using system tmp dir	Andreas Prlic	More...				over 16 years ago
Final (hopefully) update to CPDB files. BioJava can now parse them without errors.	sbliven as Spencer Bliven	More...				over 16 years ago
Fixed biojava3-core compile bugs.	sbliven as Spencer Bliven	More...				over 16 years ago

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