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Analyzed about 21 hours ago. based on code collected 2 days ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Nov 06, 2025 — Nov 06, 2026 Showing page 233 of 243 Search / Filter on:
now supporting multiple scoring schemes	Andreas Prlic	More...				over 16 years ago
boolean arguments are now displayed nicer	Andreas Prlic	More...				over 16 years ago
print various scores	Andreas Prlic	More...				over 16 years ago
now displaying ligands for CE again	Andreas Prlic	More...				over 16 years ago
changing displayed scores for AFPchain	Andreas Prlic	More...				over 16 years ago
two examples of how to use the new structure alignment algorithms	Andreas Prlic	More...				over 16 years ago
new convenience method for easier display of structure alignments	Andreas Prlic	More...				over 16 years ago
printing of matrices increases memory consumption	Andreas Prlic	More...				over 16 years ago
now supports config of string array parameters	Andreas Prlic	More...				over 16 years ago
better config of parameters for CE	Andreas Prlic	More...				over 16 years ago
updating to new user interface	Andreas Prlic	More...				over 16 years ago
new variation of CE - use sidechains.	Andreas Prlic	More...				over 16 years ago
removing deprecated class	Andreas Prlic	More...				over 16 years ago
declaring deprecated	Andreas Prlic	More...				over 16 years ago
removing warnings	Andreas Prlic	More...				over 16 years ago
no need to wrap FATCAT algorithms with reflection any longer.	Andreas Prlic	More...				over 16 years ago
no need to wrap FATCAT algorithms with reflection any longer.	Andreas Prlic	More...				over 16 years ago
new example for how to run a structure alignment	Andreas Prlic	More...				over 16 years ago
no need to wrap FATCAT algorithms with reflection any longer.	Andreas Prlic	More...				over 16 years ago
fixing package names	Andreas Prlic	More...				over 16 years ago
fixing package names	Andreas Prlic	More...				over 16 years ago
git-svn-id: http://code.open-bio.org/repos/biojava/biojava-live/trunk@7550 7c6358e6-4a41-0410-a743-a5b2a554c398	Andreas Prlic	More...				over 16 years ago
adding demo for command line startup	Andreas Prlic	More...				over 16 years ago
various improvements to the structure alignment algorithms.	Andreas Prlic	More...				over 16 years ago
Teleasing the jFATCAT algorithm under LGPL. Thanks to Yuzhen Ye and A. Godzik for granting permission to freely use and redistribute this code.	Andreas Prlic	More...				over 16 years ago
adding junit tests for jFATCAT algorithm	Andreas Prlic	More...				over 16 years ago
added acknowledgment of FATCAT origin.	Andreas Prlic	More...				over 16 years ago
Merging the circular_permutations branch back into trunk. This adds a new alignment algorithm, 'jCE-CP', and additional parameters to the existing 'jCE' algorithm which allow CE to search for circular permutations between compared structures. See CeMain and CeCPMain classes for more info.	sbliven as Spencer Bliven	More...				over 16 years ago
added 'jCE-CP' alignment method to easily set the proper parameters in the GUI	sbliven as Spencer Bliven	More...				over 16 years ago
Merged with trunk r7511:7540	sbliven as Spencer Bliven	More...				over 16 years ago

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