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Analyzed about 23 hours ago. based on code collected 2 days ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Nov 05, 2025 — Nov 05, 2026 Showing page 215 of 243 Search / Filter on:
making less verbose	Andreas Prlic	More...				over 16 years ago
instead of throwing exception, print a warning now.	Andreas Prlic	More...				over 16 years ago
only considers certain types now for the alignment	Andreas Prlic	More...				over 16 years ago
biojava3-protmod: add ACE and NH2; allow overlap between residues and ligands	Jianjiong Gao	More...				over 16 years ago
refactored aligner, scorer, and refiner enum types	Mark Chapman	More...				over 16 years ago
refactored aligner, scorer, and refiner enum types	Mark Chapman	More...				over 16 years ago
improvements to memory usage during multiple sequence alignment	Mark Chapman	More...				over 16 years ago
improvements to memory usage during multiple sequence alignment	Mark Chapman	More...				over 16 years ago
now serializable	Andreas Prlic	More...				over 16 years ago
Metal hetero groups don't need to be aligned with SEQRES residues...	Andreas Prlic	More...				over 16 years ago
improvements to memory usage during multiple sequence alignment	Mark Chapman	More...				over 16 years ago
updates in preparation for Myers-Miller linear space alignment	Mark Chapman	More...				over 16 years ago
cookbook programs	Mark Chapman	More...				over 16 years ago
we don;t need the specified junit version in particular. any junit should do...	Andreas Prlic	More...				over 16 years ago
Tests for Element class.	Peter Rose	More...				over 16 years ago
Added ElementType to each element, and several associated methods isMetal, isMetalloid, isNonMetal, getElementType. Also added missing element Tl and updated the Hg values.	Peter Rose	More...				over 16 years ago
New enumeration which is used by the Element class to classify elements.	Peter Rose	More...				over 16 years ago
biojava3-protmod: RESID:AA0382 corresponds to PDBCC:CH7 instead of CR7.	Jianjiong Gao	More...				over 16 years ago
changed private methods to default, removed MSAEmulation, and worked around class cast warning	Mark Chapman	More...				over 16 years ago
updated tests to use SubstitutionMatrixHelper	Mark Chapman	More...				over 16 years ago
simple access to common substitution matrices	Mark Chapman	More...				over 16 years ago
disabled test to allow a successful build	Mark Chapman	More...				over 16 years ago
added thread pool options to reserve X cpus, use X fraction of cpus, or use X threads	Mark Chapman	More...				over 16 years ago
biojava3-protmod: typo correction.	Jianjiong Gao	More...				over 16 years ago
biojava3-protmod: get all components.	Jianjiong Gao	More...				over 16 years ago
biojava3-protmod: add keywords for PTMs.	Jianjiong Gao	More...				over 16 years ago
added distance and similarity methods to Scorer interface	Mark Chapman	More...				over 16 years ago
minor: fixed various compiler warnings	Mark Chapman	More...				over 16 years ago
refactored AlignedSequence to have a Sequence generic type in addition to a Compound generic type	Mark Chapman	More...				over 16 years ago
changed dependence from jaligner external library to biojava3-alignment module	Mark Chapman	More...				over 16 years ago

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