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Analyzed about 24 hours ago. based on code collected 2 days ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Nov 05, 2025 — Nov 05, 2026 Showing page 214 of 243 Search / Filter on:
replacing core dependency with new biojava3-core and biojava3-alignment dependencies	Andreas Prlic	More...				about 16 years ago
Adding a couple of utility methods that are required by the structure modules and might be of general use	Andreas Prlic	More...				about 16 years ago
making access to aligners public	Andreas Prlic	More...				about 16 years ago
updates to alignment routines including a bug fix for local alignment	Mark Chapman	More...				about 16 years ago
added alignment output formatting; outputs to CLUSTALW's ALN, FASTA, and GCG's MSF formats	Mark Chapman	More...				about 16 years ago
biojava3-protmod: Comparable in StrucutureGroup; short test cases.	Jianjiong Gao	More...				about 16 years ago
refactored alignment routines: granted access to all score matrices, reduced memory requirement	Mark Chapman	More...				about 16 years ago
starting to depend on new biojava3-core	Andreas Prlic	More...				about 16 years ago
replacing ExecutorService with ThreadPoolExecutor	Andreas Prlic	More...				about 16 years ago
better logging if there is a problem	Andreas Prlic	More...				about 16 years ago
better multi-threaded execution of structure alignments triggered via the user interface	Andreas Prlic	More...				about 16 years ago
removing warning	Andreas Prlic	More...				about 16 years ago
better multi-threaded execution of structure alignments triggered via the User Interface	Andreas Prlic	More...				about 16 years ago
performance improvement when run in multi-threaded environments	Andreas Prlic	More...				about 16 years ago
reducing time spent on test	Andreas Prlic	More...				about 16 years ago
reducing time spent on test	Andreas Prlic	More...				about 16 years ago
reducing time spent on test	Andreas Prlic	More...				about 16 years ago
reducing time spent on test	Andreas Prlic	More...				about 16 years ago
fixing hard coded /tmp directory	Andreas Prlic	More...				about 16 years ago
biojava3-protmod: add isAminoAcid in StructureGroup.	Jianjiong Gao	More...				over 16 years ago
biojava3-protmod: make it an option to identify additional attachment.	Jianjiong Gao	More...				over 16 years ago
biojava3-protmod: rename ProteinModificationParser to ProteinModificationIdentifier; add more identify signitures.	Jianjiong Gao	More...				over 16 years ago
biojava3-protmod: minor code improvement.	Jianjiong Gao	More...				over 16 years ago
biojava3-protmod: bug fix: wrong residue type for unidentified linkages.	Jianjiong Gao	More...				over 16 years ago
biojava3-protmod: code refactoring: add StructureAtomLinkage; package structure change	Jianjiong Gao	More...				over 16 years ago
biojava3-protmod: serialization unit test.	Jianjiong Gao	More...				over 16 years ago
biojava3-protmod: disable cross-chain search for additional attachment.	Jianjiong Gao	More...				over 16 years ago
biojava3-protmod: save identified PTMs as Strings instead of Groups and Atoms.	Jianjiong Gao	More...				over 16 years ago
structure: add equals and hashCode to PDBResidueNumber; convert PDBResidueNumber back to Group in StructureTools	Jianjiong Gao	More...				over 16 years ago
different logging of error	Andreas Prlic	More...				over 16 years ago

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