14
I Use This!
Moderate Activity

Commits : Listings

Analyzed about 22 hours ago. based on code collected 2 days ago.
Nov 05, 2025 — Nov 05, 2026
Commit Message Contributor Files Modified Lines Added Lines Removed Code Location Date
updating dependencies More... about 16 years ago
updating dependencies More... about 16 years ago
updating dependencies More... about 16 years ago
renaming class to avoid maven conflict More... about 16 years ago
Corrected a bug in the NeedlemanWunsch algorithm class that lead to the situation that the alignments were not always displayed correctly: The end of sequences was cut because instead of telling the formatter that the complete sequence is to be displayed, only the number of columns/rows in the cost matrix was used. But these numbers represent the length of the original sequence, not the length after insertion of gaps. The alignment itself was not affected by the bug, it was only the way how the algorithm displayed its results. More... about 16 years ago
[maven-release-plugin] prepare for next development iteration More... about 16 years ago
[maven-release-plugin] prepare release biojava-3.0-alpha2 More... about 16 years ago
making test less verbose More... about 16 years ago
Added methods to see what the state of a compound set is before using it (such as how big are the string repsentations of compounds). The location list parsing code was also moved from the INCSDCParser to the LocationHelper class. All tests pass More... about 16 years ago
some minor improvement for SITE parsing.. More... about 16 years ago
now with correct artifact version nr More... about 16 years ago
now with correct artifact version nr More... about 16 years ago
now with correct artifact version nr More... about 16 years ago
now with correct artifact version nr More... about 16 years ago
now with correct artifact version nr More... about 16 years ago
now with correct artifact version nr More... about 16 years ago
now with correct artifact version nr More... about 16 years ago
now with correct artifact version nr More... about 16 years ago
now with correct artifact version nr More... about 16 years ago
now with correct artifact version nr More... about 16 years ago
now with correct artifact version nr More... about 16 years ago
now with correct artifact version nr More... about 16 years ago
now with correct artifact version nr More... about 16 years ago
now with correct artifact version nr More... about 16 years ago
now with nicer web display More... about 16 years ago
now with correct artifact version nr More... about 16 years ago
now with correct artifact version nr More... about 16 years ago
Did not realise this file is used in the test case More... about 16 years ago
Updating apple rna More... about 16 years ago
Testing for internal stops to prevent regressions More... about 16 years ago