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Commits : Listings

Analyzed 1 day ago. based on code collected 2 days ago.
Nov 05, 2025 — Nov 05, 2026
Commit Message Contributor Files Modified Lines Added Lines Removed Code Location Date
changing junit test
Andreas Prlic
More... almost 16 years ago
biojava3-protmod: description for ModificationCategory
Jianjiong Gao
More... almost 16 years ago
small speedup
Andreas Prlic
More... almost 16 years ago
biojava3-protmod: remove Serializable from ModifiedCompound
Jianjiong Gao
More... almost 16 years ago
[maven-release-plugin] prepare for next development iteration
Andreas Prlic
More... almost 16 years ago
[maven-release-plugin] prepare release biojava-3.0-alpha5
Andreas Prlic
More... almost 16 years ago
now test works
Andreas Prlic
More... almost 16 years ago
several improvements to XML serialization
Andreas Prlic
More... almost 16 years ago
quicker test
Andreas Prlic
More... almost 16 years ago
added new XML serialization to protmod module
Andreas Prlic
More... almost 16 years ago
biojava3-protmod: merging two ModifiedCompound only if they share common ligand(s)
Jianjiong Gao
More... almost 16 years ago
biojava3-protmod: skip modres and crosslink1 when merging
Jianjiong Gao
More... almost 16 years ago
Annoying code change because the SequenceMixin.reverse() did not keep up with the rename in the Sequence interface
Andy Yates
More... about 16 years ago
Sequence.getReverse() has been changed to getInverse() to avoid confusion.
Andy Yates
More... about 16 years ago
Modified in line with latest version of biojava3-core's Sequence interface
Andy Yates
More... about 16 years ago
Modified in line with latest version of biojava3-core's Sequence interface
Andy Yates
More... about 16 years ago
Change to the sequence & compoundset interfaces. We have removed getSequenceAsString with reference to positions in favor for one which is based on asking for subsequences and then requesting the String from that subsequence. All tests pass & badly named tests renamed to make sure Maven picks up on them
Andy Yates
More... about 16 years ago
Parser was broken when faced with points greater than a single integer. Regular expression is no long as greedy and seems to have fixed the problem. Circular detection has also been fixed so it cannot happen if a location skips between accessions.
Andy Yates
More... about 16 years ago
[maven-release-plugin] prepare for next development iteration
Andreas Prlic
More... about 16 years ago
[maven-release-plugin] prepare release biojava-3.0-alpha4
Andreas Prlic
More... about 16 years ago
Had to edit these to avoid delegation onto the backing store when we ask for the sequence at a given position. The code passes through a location which may decrease speed but it I'm sure it'll work.
Andy Yates
More... about 16 years ago
Bug found where the sequence exceeded the size of the k-mer. Infinite loop added & now breaking when we no longer have any more k-mers to process
Andy Yates
More... about 16 years ago
[maven-release-plugin] prepare for next development iteration
Andreas Prlic
More... about 16 years ago
[maven-release-plugin] prepare release biojava-3.0-alpha3
Andreas Prlic
More... about 16 years ago
WindowedSequence has now gone to a view system. We've also had to alter some base classes since they were delegating onto the backing sequence far too much which meant views were redundant/broken. All tests have been rerun & pass on my box. Translation may now be faster!
Andy Yates
More... about 16 years ago
code cleanup, removing warnings
Andreas Prlic
More... about 16 years ago
some small cleanup for nicer web site display
Andreas Prlic
More... about 16 years ago
multiple improvements to visualize protmods on RCSB PDB website
Andreas Prlic
More... about 16 years ago
this actually compiles with Java 1.5
Andreas Prlic
More... about 16 years ago
updating dependencies
Andreas Prlic
More... about 16 years ago