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Analyzed about 23 hours ago. based on code collected 2 days ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Nov 05, 2025 — Nov 05, 2026 Showing page 212 of 243 Search / Filter on:
Modifications to the translation code to increase speed. Also found bugs with stop codon handling	Andy Yates	More...				about 16 years ago
Allowing translations to be case insensitive. Test case also added	Andy Yates	More...				about 16 years ago
Added method setProxySequenceReader and getProxySequenceReader to AbstractSequence to allow lazy instantiation of Sequence class. Checking in the beginning of handling Features with more to come.	Scooter Willis	More...				about 16 years ago
Added method setProxySequenceReader and getProxySequenceReader to AbstractSequence to allow lazy instantiation of Sequence class. Checking in the beginning of handling Features with more to come.	Scooter Willis	More...				about 16 years ago
updating new Atom nr. to match results after altLocs are being parsed.	Andreas Prlic	More...				about 16 years ago
making parsing less verbose	Andreas Prlic	More...				about 16 years ago
major API update. Renaming getParent methods and better handling of residue numbers, insCodes and altLocs.	Andreas Prlic	More...				about 16 years ago
update to latest version of API	Andreas Prlic	More...				about 16 years ago
adding method to reverse the pair	Andreas Prlic	More...				about 16 years ago
Refactored Group interface and HetAtomImpl to use ResidueNumber as a replacement for the get/setPDBCode.	JulesJacobsen as Jules Jacobsen	More...				about 16 years ago
Refactored Group interface and HetAtomImpl to use ResidueNumber as a replacement for the get/setPDBCode.	JulesJacobsen as Jules Jacobsen	More...				about 16 years ago
git-svn-id: http://code.open-bio.org/repos/biojava/biojava-live/trunk@8273 7c6358e6-4a41-0410-a743-a5b2a554c398	Sylvain Foisy	More...				about 16 years ago
git-svn-id: http://code.open-bio.org/repos/biojava/biojava-live/trunk@8272 7c6358e6-4a41-0410-a743-a5b2a554c398	Sylvain Foisy	More...				about 16 years ago
git-svn-id: http://code.open-bio.org/repos/biojava/biojava-live/trunk@8271 7c6358e6-4a41-0410-a743-a5b2a554c398	Sylvain Foisy	More...				about 16 years ago
Correcting a "==" inequality, using Arrays' searchBinary() method instead. Also removed redundant material because of my goofussness :-)	Sylvain Foisy	More...				about 16 years ago
Correcting a "==" inequality, using Arrays' searchBinary() method instead.	Sylvain Foisy	More...				about 16 years ago
Various fixing to match biojava3 usage: removing usage of BioException	Sylvain Foisy	More...				about 16 years ago
deleting sequence modules. The code should be in biojava3-core now.	Andreas Prlic	More...				about 16 years ago
deleting the sequence modules. This should be all in biojava3-core now.	Andreas Prlic	More...				about 16 years ago
Fix for location parsing (see # 3140) - On behalf of Deepak Sheoran	George Waldon	More...				about 16 years ago
extending junit tests with conversion info	Andreas Prlic	More...				about 16 years ago
fixing a junit test	Andreas Prlic	More...				about 16 years ago
now conservation also works with Accession IDs	Andreas Prlic	More...				about 16 years ago
adding new StringFormat	Andreas Prlic	More...				about 16 years ago
adding display of sequence conservation for pairwise alignments	Andreas Prlic	More...				about 16 years ago
Correcting a "==" inequality	Sylvain Foisy	More...				about 16 years ago
Parsing of protein files in EMBL format (see #3137).	George Waldon	More...				about 16 years ago
and disabling debug mode...	Andreas Prlic	More...				about 16 years ago
using local alignment rather than global alignment, to avoid end gap issues.	Andreas Prlic	More...				about 16 years ago
disabling debug mode	Andreas Prlic	More...				about 16 years ago

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