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Analyzed 1 day ago. based on code collected 3 days ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Nov 05, 2025 — Nov 05, 2026 Showing page 135 of 243 Search / Filter on:
Fixed bug, class that implemented clone method did not implement Cloneable interface	Benjamin Boyle	More...				about 12 years ago
AtomImpl (serialized class) has member variable class Bond that is not serialized. Bond class serialized.	Benjamin Boyle	More...				about 12 years ago
Removing duplicate PDB_DIR definitions.	sbliven as Spencer Bliven	More...				about 12 years ago
Renaming CACHE_DIR to match its value (PDB_CACHE_DIR)	sbliven as Spencer Bliven	More...				about 12 years ago
Fixed bug, class defines clone method but did not implement Cloneable interface	Benjamin Boyle	More...				about 12 years ago
Fixed several bugs, potentially calling with null argument, and having array print contents of array instead of address	Benjamin Boyle	More...				about 12 years ago
Another small fix for PDB_DIR	josemduarte	More...				about 12 years ago
More fixes for PDB_DIR reading, plus some #111 and #155	josemduarte	More...				about 12 years ago
Merge pull request #28 from biojava/master	emckee2006	More...				about 12 years ago
Merge pull request #183 from emckee2006/master	emckee2006	More...				about 12 years ago
Remove compile warnings	emckee2006	More...				about 12 years ago
Merge pull request #27 from biojava/master	emckee2006	More...				about 12 years ago
Merge pull request #182 from emckee2006/master	emckee2006	More...				about 12 years ago
Enhance UniprotProxySequenceReader to be able to parse Uniprot when XML record is passed as a string. This is useful if parsing the a large subset of Uniprot which has been previously downloaded (the Swiss-Prot xml.gz file, for example). Also support extracting Uniprot accessions.	emckee2006	More...				about 12 years ago
Making tests use split dir layout	Jose Manuel Duarte	More...				about 12 years ago
Cath files now also go to PDB_CACHE_DIR	Jose Manuel Duarte	More...				about 12 years ago
SIFTS dir now also goes to PDB_CACHE_DIR instead of PDB_DIR	Jose Manuel Duarte	More...				about 12 years ago
Redoing exception handling in test by using junit4's "expected" #111	Jose Manuel Duarte	More...				about 12 years ago
More consolidation on PDB_DIR/PDB_CACHE_DIR reading - reduced the number of initialisations in AtomCache and readers - now all chem comp providers use PDB_CACHE_DIR - a few #111 and #155 fixes	Jose Manuel Duarte	More...				about 12 years ago
o Added support for feature parsing from the genbank file. It supports also qualifiers and complex nested locations	Paolo Pavan	More...				about 12 years ago
Improving and unifying the setting of PDB_DIR and PDB_CACHE_DIR - also improvements for #111 and #155 - some more work to do to make sure AtomCache and the Readers don't double read the environment variables/system properties	josemduarte	More...				about 12 years ago
Merge pull request #178 from benjamintboyle/master	Andreas Prlic	More...				about 12 years ago
Convert biojava3-protein-disorder project to use slf4j	Benjamin Boyle	More...				about 12 years ago
Update readme.md	Andreas Prlic	More...				about 12 years ago
updating current version to 3.1.0	Andreas Prlic	More...				about 12 years ago
manually resolving merge conflict	Andreas Prlic	More...				about 12 years ago
Merge branch 'josemduarte-master'	Andreas Prlic	More...				about 12 years ago
Merge pull request #177 from benjamintboyle/master	Andreas Prlic	More...				about 12 years ago
Merge remote-tracking branch 'upstream/master'	Benjamin Boyle	More...				about 12 years ago
Added log4j configuration to org.biojava3.modfinder, org.biojava3.ontology, org.biojava3.phylo #155	Benjamin Boyle	More...				about 12 years ago

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