| add understanding non-standard DNA nucleotides |
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about 12 years ago
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| More #111 and #155 |
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about 12 years ago
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| Changing logging configuration (#155) |
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about 12 years ago
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| More on #155 and #111 |
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about 12 years ago
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| Important fix for #155, was not specifying runtime scope correctly |
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about 12 years ago
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| Convert SimpleMMcifParser to use SLF4J logging |
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about 12 years ago
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| Default log4j config now outputs to stderr |
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about 12 years ago
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| Some fixes for #111 and #155 |
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about 12 years ago
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| Merge pull request #159 from josemduarte/master |
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about 12 years ago
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| Fixed issue: wasn't pointing to the right class in logger |
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about 12 years ago
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| Introducing slf4j #155 - added runTime scope binding for log4j2 since it's the one logger framework that was used already elsewhere. We even had already some config files for it in the structure module - added the safe config to all poms of modules. Config files for log4j2 are only in the structure module. Other modules will have to add config files if needed - default level in config files set to: warn for run, info for test - moved logging in the PDB parser to slf4j |
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about 12 years ago
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| #156 adding missing fields |
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about 12 years ago
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| #156 adding missing fields |
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about 12 years ago
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| Merge pull request #158 from josemduarte/master |
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about 12 years ago
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| Introduced a more general interface-between-2-molecules representation Now ChainInterface/List became StructureInterface/List and are moved to contacts package. Other kind of interfaces between 2 molecules or submolecules (e.g. between domains) can be handled with this representation. |
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about 12 years ago
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| Added unit test for CrystalBuilder and fixed some docs |
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about 12 years ago
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| Some refactoring and improvement of docs |
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about 12 years ago
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| Merge pull request #157 from sbliven/master |
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about 12 years ago
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| Improved HETATOMs filtering for interface ASA calculation |
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about 12 years ago
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| Now hetatoms can be filtered by size when calculating ASAs in interfaces |
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about 12 years ago
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| [maven-release-plugin] prepare for next development iteration |
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about 12 years ago
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| [maven-release-plugin] prepare release biojava-legacy-1.9.1 |
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about 12 years ago
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| Improved mmcif logging (#154) |
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about 12 years ago
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| Fixing xerces dependency conflict between jre and junit-addons |
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about 12 years ago
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| Fixes to poms: integration tests again run, AND things install |
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about 12 years ago
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| Fixes to poms: now integrationtest and comparison tool can install |
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about 12 years ago
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| Merge pull request #153 from sbliven/master |
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about 12 years ago
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| Fixing minor compile error from merge |
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about 12 years ago
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| upgrading to latest Jmol library |
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about 12 years ago
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| Implemented calculation of unique crystal contacts |
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about 12 years ago
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