| Some minor doc and deprecation changes |
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almost 12 years ago
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| Minor exception change |
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almost 12 years ago
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| More bug fixing in Structure/Chain/Group cloning: - parent references are now correctly reset - compounds are now correctly deep-copied |
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almost 12 years ago
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| Deleted FeatureParser interface |
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almost 12 years ago
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| Fixed important bug: ChainImpl.clone wasn't deep copying seqres groups - also added a new test for checking of cross references so that cloning bugs in the structure data model can be detected |
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almost 12 years ago
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| Small bug fix: calling getCompounds explicitly at the end of parsing |
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almost 12 years ago
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| Merge pull request #218 from sbliven/master |
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almost 12 years ago
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| Additional methods for getting Chain type (protein, nucleic, etc) |
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almost 12 years ago
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| Added a couple of methods to classes in contact package |
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almost 12 years ago
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| Expand ~ in MMCIFFileReader |
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almost 12 years ago
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| Merge remote-tracking branch 'emmebi/master' |
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almost 12 years ago
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| Expanding ~ in PDBFileReader paths |
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almost 12 years ago
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| Better logging and some clean up in SeqRes2AtomAligner |
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almost 12 years ago
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| Better logging in sifts #155 |
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almost 12 years ago
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| Merge pull request #217 from josemduarte/master |
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almost 12 years ago
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| Merge pull request #215 from josemduarte/master |
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almost 12 years ago
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| Removing logger from demo classes |
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almost 12 years ago
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| Adding isIsologous |
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almost 12 years ago
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| Adding cluster id and sorting by average areas |
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almost 12 years ago
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| Adding more docs, removed 1 warning |
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almost 12 years ago
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| Fixed bug in demo (nmr structures would null point) |
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almost 12 years ago
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| First implementation of interface clustering based on contact overlap |
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almost 12 years ago
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| Merged entity heuristics stuff into the existing Compound code |
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almost 12 years ago
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| Forgot to add a file |
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almost 12 years ago
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| ome tests fixings |
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almost 12 years ago
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| Another change of interface in compound, redid pdb parsing accordingly |
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almost 12 years ago
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| Finally compound parsing working properly in mmcif parsing - TestLongPdbVsMmCifParsing passes for 1000 random entries |
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almost 12 years ago
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| Converted the CE ScoringStrategy parameter to an Enum |
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almost 12 years ago
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| GenbankProxySequenceReader now implements the newborn FeatureRetriever interface and is able to use the new GenbankSequenceParser |
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almost 12 years ago
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| Fixed a few imporant issues with Compound mmCIF parsing |
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almost 12 years ago
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