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Analyzed 1 day ago. based on code collected 3 days ago.
Nov 05, 2025 — Nov 05, 2026
Commit Message Contributor Files Modified Lines Added Lines Removed Code Location Date
Removing references to deprecated methods
sbliven
as Spencer Bliven
More... almost 12 years ago
Improvements to LocalPDBDirectory (aka *FileReader)
sbliven
as Spencer Bliven
More... almost 12 years ago
Better docs
josemduarte
More... almost 12 years ago
Fix warnings
sbliven
as Spencer Bliven
More... almost 12 years ago
Changed BiologicalAssemblyTransformation to use vecmath's Matrix4d
josemduarte
More... almost 12 years ago
Removing isSplit parameters globally (#225)
sbliven
as Spencer Bliven
More... almost 12 years ago
Removed the nrBioassemblies field
josemduarte
More... almost 12 years ago
Fixed bug: FileParsingParams.isParseBioAssembly was not respected in mmCIF parsing. Now long parsing test also tests bio assemblies in header
josemduarte
More... almost 12 years ago
Major refactoring of PDBFileReader and MMCIFFileReader
sbliven
as Spencer Bliven
More... almost 12 years ago
Merge pull request #179 from paolopavan/master
Andreas Prlic
More... almost 12 years ago
More logging fixes #155
Jose Manuel Duarte
More... almost 12 years ago
Moving getPredominantGroupType to StructureTools and added better docs
Jose Manuel Duarte
More... almost 12 years ago
Making Group.isWater() usage more consistent, removed some warnings
Jose Manuel Duarte
More... almost 12 years ago
Merge pull request #31 from biojava/master
emckee2006
More... almost 12 years ago
- Merge branch biojava/master into InsdcParser - Fixed conflicts: biojava3-core/src/main/java/org/biojava3/core/sequence/ProteinSequence.java biojava3-core/src/main/java/org/biojava3/core/sequence/features/FeatureDbReferenceInfo.java biojava3-core/src/main/java/org/biojava3/core/sequence/io/GenbankSequenceParser.java
Jacek Grzebyta
More... almost 12 years ago
ignore *~ files
Jacek Grzebyta
More... almost 12 years ago
Merge pull request #222 from christiam/master
Andreas Prlic
More... almost 12 years ago
Change BLAST URL per http://www.ncbi.nlm.nih.gov/news/05-22-2014-BLAST-URL-domain-change/, fixes #24
Michael Heuer
More... almost 12 years ago
Change BLAST URL per http://www.ncbi.nlm.nih.gov/news/05-22-2014-BLAST-URL-domain-change/
Christiam Camacho
More... almost 12 years ago
switched off LocationParserTest
Jacek Grzebyta
More... almost 12 years ago
remove FeatureParser declaration from imports
Jacek Grzebyta
More... almost 12 years ago
Merge pull request #221 from sbliven/master
sbliven
as Spencer Bliven
More... almost 12 years ago
Documentation improvements
sbliven
as Spencer Bliven
More... almost 12 years ago
Merge remote-tracking branch 'biojava/master'
sbliven
as Spencer Bliven
More... almost 12 years ago
Improving StructureInterface.toPDB
Jose Manuel Duarte
More... almost 12 years ago
Fixing an altLoc bug in mmcif parsing: parent chain wasn't set - also added toPDB to Chain/ChainImpl
Jose Manuel Duarte
More... almost 12 years ago
Fix #219
sbliven
as Spencer Bliven
More... almost 12 years ago
Adding @Override and @Deprecated tags where applicable
sbliven
as Spencer Bliven
More... almost 12 years ago
Fixed issue in test
josemduarte
More... almost 12 years ago
Bug fix: not including waters in contact calculation
Jose Manuel Duarte
More... almost 12 years ago