Tags : Browse Projects

Select a tag to browse associated projects and drill deeper into the tag cloud.

Fiji TrackMate

Compare

  Analyzed about 4 hours ago

TrackMate provides the tools to perform single particle tracking (SPT). SPT is an image analysis challenge where the goal is to segment and follow over time some labelled, spot-like structures. Each spot is segmented in multiple frames and its trajectory is reconstructed by assigning it an identity ... [More] over these frames, in the shape of a track. These tracks can then be either visualized or yield further analysis results such as velocity, total displacement, diffusion characteristics, division events, etc... [Less]

57.1K lines of code

4 current contributors

1 day since last commit

3 users on Open Hub

Low Activity
5.0
 
I Use This

MOLGENIS model-driven database platform

Compare

  Analyzed about 13 hours ago

MOLGENIS can be used to generate databases for life science experiments (micrroarray, mass spectrometry, genomics) having a web user interface, csv exchange format, and programmatic interfaces (web services, rest, and r-project). See NatRevGen 8.

484K lines of code

23 current contributors

3 months since last commit

1 users on Open Hub

Very Low Activity
4.0
   
I Use This
Licenses: No declared licenses

isa-api

Compare

  Analyzed about 19 hours ago

The open source ISA metadata tracking tools help to manage an increasingly diverse set of life science, environmental and biomedical experiments that employing one or a combination of technologies. Built around the ‘Investigation’ (the project context), Study’ (a unit of research) and ‘Assay’ ... [More] (analytical measurement) general-purpose Tabular format, the ISA tools helps you to provide rich description of the experimental metadata (i.e. sample characteristics, technology and measurement types, sample-to-data relationships) so that the resulting data and discoveries are reproducible and reusable. To find out more about ISA, see www.isa-tools.org [Less]

351K lines of code

4 current contributors

5 months since last commit

0 users on Open Hub

Very Low Activity
0.0
 
I Use This

KEGG4J

Compare

  Analyzed about 12 hours ago

Java Utils regarding the KEGG API

2.93K lines of code

0 current contributors

about 3 years since last commit

0 users on Open Hub

Inactive
0.0
 
I Use This

HMDB4J

Compare

  Analyzed about 16 hours ago

Java utils to parse and handle the http://www.hmdb.ca/downloads files

2.12K lines of code

0 current contributors

about 3 years since last commit

0 users on Open Hub

Inactive
0.0
 
I Use This

FASTA4J

Compare

  Analyzed about 10 hours ago

FASTA file format utils

1K lines of code

0 current contributors

about 3 years since last commit

0 users on Open Hub

Inactive
0.0
 
I Use This

UniProt4J

Compare

  Analyzed about 23 hours ago

Utils for the REST API of http://www.uniprot.org

1.98K lines of code

0 current contributors

about 3 years since last commit

0 users on Open Hub

Inactive
0.0
 
I Use This

Sider4J

Compare

  Analyzed about 7 hours ago

Java utils for the sider http://sideeffects.embl.de/ database files

537 lines of code

0 current contributors

over 6 years since last commit

0 users on Open Hub

Inactive
0.0
 
I Use This

VCF4J

Compare

  Analyzed about 2 hours ago

Java utils for parsing the variant call format

1.72K lines of code

0 current contributors

over 2 years since last commit

0 users on Open Hub

Inactive
0.0
 
I Use This

BioFSharp

Compare

  Analyzed about 22 hours ago

F# is interactive, functional language with fast run time. Here we provide tools sets for bioinformatics.

17.6K lines of code

11 current contributors

almost 4 years since last commit

0 users on Open Hub

Inactive
0.0
 
I Use This