Tags : Browse Projects

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Bio-Formats

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  Analyzed about 22 hours ago

Bio-Formats is a standalone Java library for reading and writing life sciences image file formats. It is capable of parsing both pixels and metadata for a large number of formats, as well as writing to several formats.

195K lines of code

18 current contributors

2 days since last commit

8 users on Open Hub

Moderate Activity
5.0
 
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Licenses: BSD-2-Clause, gpl

GoFigure 2

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  Analyzed almost 3 years ago

The prime goal of GoFigure 2 is the automatic segmentation of nuclei and cell membranes and in temporally tracking them amidst cell division to create lineages.

155K lines of code

0 current contributors

over 8 years since last commit

3 users on Open Hub

Activity Not Available
5.0
 
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Fiji TrackMate

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  Analyzed about 22 hours ago

TrackMate provides the tools to perform single particle tracking (SPT). SPT is an image analysis challenge where the goal is to segment and follow over time some labelled, spot-like structures. Each spot is segmented in multiple frames and its trajectory is reconstructed by assigning it an identity ... [More] over these frames, in the shape of a track. These tracks can then be either visualized or yield further analysis results such as velocity, total displacement, diffusion characteristics, division events, etc... [Less]

56.2K lines of code

4 current contributors

14 days since last commit

3 users on Open Hub

Moderate Activity
5.0
 
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Gwyddion

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  Analyzed over 2 years ago

Gwyddion is a modular program for SPM (scanning probe microscopy) data visualization and analysis. Primarily it is intended for analysis of height fields obtained by scanning probe microscopy techniques (AFM, MFM, STM, SNOM/NSOM) and it supports many SPM data formats. However, it can also be used ... [More] for general height field and image processing, for instance for analysis of profilometry data. [Less]

494K lines of code

5 current contributors

about 3 years since last commit

2 users on Open Hub

Activity Not Available
0.0
 
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tomviz

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  Analyzed 1 day ago

Cross platform, open source application for the processing, visualization, and analysis of 3D tomography data

78K lines of code

9 current contributors

about 1 month since last commit

1 users on Open Hub

Moderate Activity
0.0
 
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EBSD-Image

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  Analyzed almost 3 years ago

EBSD-Image is a free open-source software to analyze EBSD diffraction patterns and mappings. It is built on top of RML-Image, an image analysis freeware. It therefore combines image analysis routines and tools specific to EBSD such as an engine capable of analyzing EBSD diffraction patterns. It is ... [More] written in Java (cross-platform) and has a graphical and command line interface. The objectives of this project were to develop a platform for the EBSD community to further improve the technique. In contrast with other EBSD software, EBSD-Image is flexible and extensible. Users can decide how to analyze diffraction patterns by having access to the sequence of operations and all the parameters. New algorithms can be easily implemented inside the engine. [Less]

54.9K lines of code

0 current contributors

almost 11 years since last commit

1 users on Open Hub

Activity Not Available
0.0
 
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AutoTx

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  Analyzed about 5 hours ago

A Windows service doing automatic background file transfers to a UNC path with email reporting to users and error reporting to admins.

3.87K lines of code

0 current contributors

over 4 years since last commit

1 users on Open Hub

Inactive
5.0
 
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Endrov

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  Analyzed 3 months ago

Endrov is an open-source plugin architecture aimed for image analysis and data processing. Being based on Java, it is portable and can both be run locally and as an applet. It was designed to overcome the lack of support for spatio-temporal image data in common applications, and has since grown to ... [More] become a full-featured platform for image analysis. [Less]

227K lines of code

0 current contributors

about 9 years since last commit

1 users on Open Hub

Activity Not Available
0.0
 
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Huygens Remote Manager (HRM)

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  Analyzed almost 3 years ago

The Huygens Remote Manager is an open-source, efficient, multi-user web-based interface to the Huygens software by Scientific Volume Imaging for parallel batch deconvolutions.

281K lines of code

6 current contributors

almost 3 years since last commit

1 users on Open Hub

Activity Not Available
4.0
   
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NoiSee

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  Analyzed 1 day ago

An easy-to-use ImageJ macro for measuring SNR (signal-to-noise ratio) of light microscopes.

166 lines of code

0 current contributors

about 4 years since last commit

0 users on Open Hub

Inactive
0.0
 
I Use This