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Fiji

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  Analyzed 10 months ago

Fiji is Just ImageJ -- batteries included For users, Fiji is easy to install and update, bundles a set of plugins in a coherent menu structure (and updatable), along with comprehensive documentation. For developers, Fiji as an open source project is hosted on a git source version control ... [More] repository, with access to the source code of all internals, libraries and plugins, and eases the development and scripting of plugins. [Less]

2.13M lines of code

32 current contributors

11 months since last commit

9 users on Open Hub

Activity Not Available
5.0
 
0 Reviews
I Use This
Mostly written in Java
Licenses: No declared licenses
Tags analysis google-summer-of-code image imagej java open-source processing scientific

ImageJ2

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  Analyzed about 15 hours ago

ImageJ2: a rewrite of ImageJ for multidimensional image data, with a focus on scientific imaging

186K lines of code

26 current contributors

18 days since last commit

6 users on Open Hub

Moderate Activity
4.5
   
0 Reviews
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Mostly written in Java
Licenses: bsd_2clau...
Tags analysis image imagej java open_source processing scientific

ImgLib2

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  Analyzed 2 days ago

A generic next-generation Java library for image processing

177K lines of code

12 current contributors

about 1 month since last commit

6 users on Open Hub

Moderate Activity
5.0
 
0 Reviews
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Mostly written in Java
Licenses: bsd_2clau...
Tags image imagej java scientific

Icy Imaging

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  Analyzed about 10 hours ago

Icy is an open source bio image analysis software.

167K lines of code

3 current contributors

over 3 years since last commit

3 users on Open Hub

Inactive
3.5
   
0 Reviews
I Use This
Mostly written in Java
Licenses: gpl3
Tags biology icy image image_analysis imageanalysis imagej image_processing imageprocessing visualization

Fiji TrackMate

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  Analyzed about 16 hours ago

TrackMate provides the tools to perform single particle tracking (SPT). SPT is an image analysis challenge where the goal is to segment and follow over time some labelled, spot-like structures. Each spot is segmented in multiple frames and its trajectory is reconstructed by assigning it an identity ... [More] over these frames, in the shape of a track. These tracks can then be either visualized or yield further analysis results such as velocity, total displacement, diffusion characteristics, division events, etc... [Less]

57.1K lines of code

4 current contributors

about 1 month since last commit

3 users on Open Hub

Low Activity
5.0
 
0 Reviews
I Use This
Mostly written in Java
Licenses: gpl
Tags fiji imageanalysis imagej java lifescience microscopy particletracking

The ADAMS Flow

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  Analyzed 2 days ago

ADAMS is a flexible workflow engine aimed at quickly building and maintaining data-driven, reactive workflows, easily integrated into business processes. Instead of placing operators on a canvas and manually connecting them, a tree structure and flow control operators determine how data is ... [More] processed (sequentially/parallel). This allows rapid development and easy maintenance of large workflows, with hundreds or thousands of operators. Operators include machine learning (WEKA, MOA, MEKA) and image processing (ImageJ, JAI, BoofCV, OpenImaJ, LIRE, ImageMagick and Gnuplot). R available using Rserve. WEKA webservice allows other frameworks to use WEKA models. Fast prototyping with Groovy and Jython. Read/write support for various databases and spreadsheet applications. [Less]

1.09M lines of code

4 current contributors

11 days since last commit

2 users on Open Hub

Moderate Activity
0.0
 
0 Reviews
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Mostly written in Java
Licenses: gpl3_or_l...
Tags deeplearning gis gnuplot groovy imagej imagemagick jai java jython machine_learning meka moa 8 more...

Mistral

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  Analyzed 2 days ago

Mistral is a high-level imaging engine for the Java� Standard Edition platform (J2SE). It has been designed as an abstraction layer over the real imaging engine, that can be freely choosen among one of the most popular around (e.g. JAI, ImageJ), thus allowing the programmer to focus on the ... [More] algorithm, without wasting time on implementation details - a sort of extension of the WORA (Write Once, Run Anywhere) concept. Mistral goes even further, by providing a simple-but-effective ImagingProcessor which is able to schedule well-written image processing algorithms in different computing scenarios: from the single CPU, to the multi-core, up to the Sun Grid Computing Facility. Also cheap, local multiple node clusters based on Jini� and Rio technologies are supported. [Less]

14.2K lines of code

1 current contributors

11 months since last commit

1 users on Open Hub

Very Low Activity
0.0
 
0 Reviews
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Mostly written in Java
Licenses: apache_2
Tags grid imagej imaging jai java

NoiSee

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  Analyzed 1 day ago

An easy-to-use ImageJ macro for measuring SNR (signal-to-noise ratio) of light microscopes.

166 lines of code

0 current contributors

about 5 years since last commit

0 users on Open Hub

Inactive
0.0
 
0 Reviews
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Mostly written in Python
Licenses: gpl3
Tags assessment confocal fiji fluorescence imagej macro microscopy qualityassessment signal-to-noise snr

Yawi3D

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  Analyzed about 22 hours ago

Yawi 3D (Yet Another Wand for ImageJ) implements a 3D selection tool plugin for ImageJ suitable for CT scanned images; it helps in the selection of 3D Region Of Interest (ROI) containing a tumor mass; it also provides a measure of ROI volume

1.18K lines of code

0 current contributors

about 16 years since last commit

0 users on Open Hub

Inactive
0.0
 
0 Reviews
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Mostly written in Java
Licenses: gpl3
Tags image imagej java medical processing

CaManager

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Claimed by German Neuroinformatics Node Analyzed 2 days ago

Calcium-Imaging tool suite for ImageJ/Fiji

6.07K lines of code

2 current contributors

almost 5 years since last commit

0 users on Open Hub

Inactive
0.0
 
0 Reviews
I Use This
Mostly written in Java
Licenses: No declared licenses
Tags fiji imagej imaging java neuroscience