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GenoViz

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  Analyzed about 8 hours ago

The GenoViz project provides tools for genomics data visualization. It consists of the following: 1) the GenoViz SDK, a library of re-usable components, 2) the Genometry data model to represent relationships between biological sequences, and 3) the Integrated Genome Browser (IGB, "igbee"), an ... [More] application built upon the GenoViz SDK and Genometry for visualization and exploration of genomes and corresponding annotations from multiple data sources. IGB supports the Distributed Annotation System (DAS) protocol, version 1 and 2, as well as other optimized binary data formats that are designed for efficient exploration of large, whole genome data sets. [Less]

187K lines of code

35 current contributors

3 months since last commit

4 users on Open Hub

Low Activity
5.0
 
1 Review
I Use This
Mostly written in Java
Licenses: common_pu...
Tags bio-informatics bioinformatics biology cross-platform genetics java research science scientific visualisation visualization

Bika Open Source LIMS 3

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  Analyzed over 1 year ago

Code analysis here refers to version 3 of Bika's Free and Open Source laboratory information management systems for ISO 17025 compliant applications in agriculture, water quality management, environmental monitoring, food and beverages, public health, bio-informatics and inter-laboratory proficiency ... [More] testing. Bika combines web content management and workflow processing for a one-stop LIMS portal · Built in Plone · Professionally supported NB For the full code analysis, including Bika 1 and 2, please see archived statistics at Bikalabs.org - 7,781 commits, 37 contributors, 740816 lines of code, 201 years of effort at estimated cost of $11,050,000 bika (bi:ka Zulu trad) - report, from clan to clan, bring news of weddings, births, festivals and funerals tell it as it is [Less]

192K lines of code

1 current contributors

over 2 years since last commit

3 users on Open Hub

Activity Not Available
5.0
 
0 Reviews
I Use This
Mostly written in Python
Licenses: AGPL3, GNU_Gener...
Tags genetics health instruments laboratory lims lis plone python quality water zope

cloudbiolinux

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  Analyzed 1 day ago

CloudBioLinux: configure virtual (or real) machines with tools for biological analyses

12.5K lines of code

14 current contributors

6 months since last commit

2 users on Open Hub

Very Low Activity
0.0
 
0 Reviews
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Mostly written in Python
Licenses: mit
Tags analysis bio_informatics biology genetics genomics r

R/qtl

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  Analyzed about 2 years ago

R/qtl: A QTL mapping environment

87.8K lines of code

2 current contributors

about 2 years since last commit

1 users on Open Hub

Activity Not Available
5.0
 
0 Reviews
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Mostly written in R
Licenses: No declared licenses
Tags allele association c c++ cross-platform eqtl experimental genetics genotype mqtl plink qtl 1 more...

Madeline

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  Analyzed 1 day ago

The Madeline 2.0 Pedigree Drawing Engine is a pedigree drawing program designed to handle large and complex pedigrees with an emphasis on readability and aesthetics. Although the program takes inspiration from Madeline v. 0.935, the Madeline 2.0 Pedigree Drawing Engine, or just Madeline 2.0 for ... [More] short, is in fact a completely new program written from scratch. [Less]

56.3K lines of code

0 current contributors

over 1 year since last commit

1 users on Open Hub

Very Low Activity
5.0
 
0 Reviews
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Mostly written in C++
Licenses: gpl
Tags bio-informatics bioinformatics biology c++ cross-platform genetics pedigree science visualisation visualization xml

MOLGENIS model-driven database platform

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  Analyzed about 24 hours ago

MOLGENIS can be used to generate databases for life science experiments (micrroarray, mass spectrometry, genomics) having a web user interface, csv exchange format, and programmatic interfaces (web services, rest, and r-project). See NatRevGen 8.

484K lines of code

23 current contributors

8 months since last commit

1 users on Open Hub

Very Low Activity
4.0
   
0 Reviews
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Mostly written in Java
Licenses: No declared licenses
Tags bioinformatics biomedical crud database genetics java javascript lifescience online portal research

bio-charm

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  Analyzed about 1 hour ago

CHarm provides codon harmonization for heterologous expression systems.

564 lines of code

0 current contributors

over 5 years since last commit

1 users on Open Hub

Inactive
0.0
 
0 Reviews
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Mostly written in Python
Licenses: mit
Tags bioinformatics biology cross_platform genetics research science

Collagene

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  Analyzed 1 day ago

Software for cloning

13.5K lines of code

0 current contributors

over 8 years since last commit

1 users on Open Hub

Inactive
0.0
 
0 Reviews
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Mostly written in Java
Licenses: BSD-3-Clause
Tags bioinformatics biology cloning genetics gibson_assembly java primerdesign restriction_digest science sequenceanalysis sequencing vector 1 more...

wormbase

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  Analyzed almost 4 years ago

WormBase is the public database for information on C. elegans and related nematodes.

3.63M lines of code

14 current contributors

almost 4 years since last commit

0 users on Open Hub

Activity Not Available
0.0
 
0 Reviews
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Mostly written in JavaScript
Licenses: gpl3_or_l...
Tags bioinformatics catalyst celegans genetics genomics mod mvc nematodes wormbase

FASTA4J

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  Analyzed 2 days ago

FASTA file format utils

1K lines of code

0 current contributors

over 2 years since last commit

0 users on Open Hub

Inactive
0.0
 
0 Reviews
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Mostly written in Java
Licenses: apache_2
Tags bioinformatics exome fasta genetics genome genomics lifescience sequencing