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BioPerl

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  Analyzed about 5 hours ago

Bioperl is a large, object-oriented toolkit of interacting perl modules useful for building bioinformatics solutions in Perl. The collection of modules in the bioperl-live repository contains the core functionality. Additional packages for creating graphical interfaces (bioperl-gui), setting up ... [More] persistent ORM storage in RDMBS (bioperl-db), running and parsing the results from hundreds of bioinformatics applications (bioperl-run), and software to automate bioinformatic analyses (bioperl-pipeline) are all available from our Subversion repository. [Less]

296K lines of code

9 current contributors

24 days since last commit

22 users on Open Hub

Low Activity
4.22222
   
I Use This

BioJava

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  Analyzed 1 day ago

BioJava is an open-source project dedicated to providing a Java framework for processing biological data. It include objects for manipulating biological sequences, file parsers, DAS client and server support, access to BioSQL and Ensembl databases, tools for making sequence analysis GUIs and ... [More] powerful analysis and statistical routines including a dynamic programming toolkit. BioJava is used in several real-world bioinformatics applications and has been used for bioinformatics analysis in a number of published studies. [Less]

1.07M lines of code

13 current contributors

25 days since last commit

14 users on Open Hub

Moderate Activity
4.5
   
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Avogadro

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  Analyzed 26 minutes ago

Avogadro is an advanced molecular editor designed for cross-platform use in computational chemistry, molecular modeling, bioinformatics, materials science, and related areas. It offers flexible rendering and a powerful plugin architecture.

174K lines of code

0 current contributors

over 2 years since last commit

14 users on Open Hub

Inactive
4.85714
   
I Use This

Jmol

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  No analysis available

Jmol is a Java molecular viewer for three-dimensional chemical structures. Features include reading a variety of file types and output from quantum chemistry programs, and animation of multi-frame files and computed normal modes from quantum programs.

0 lines of code

0 current contributors

0 since last commit

12 users on Open Hub

Activity Not Available
4.0
   
I Use This
Mostly written in language not available
Licenses: lgpl

The Chemistry Development Kit

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  Analyzed 1 day ago

The Chemistry Development Kit (CDK) is a library of Java classes for chemo-, bioinformatics, computational chemistry, and chemometrics. It provides important algorithms like substructure search, SMILES, Gasteiger charges, QSAR descriptor calculation, 3D structure generation, 2D layout and rendering, many IO formats, atom typing, and more.

589K lines of code

10 current contributors

8 days since last commit

6 users on Open Hub

Moderate Activity
4.33333
   
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JChemPaint Applet and Swing Application

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  Analyzed about 1 hour ago

JChemPaint is a program for drawing 2D chemical structures like those found in most chemistry textbooks.

41.5K lines of code

0 current contributors

about 19 years since last commit

5 users on Open Hub

Inactive
4.0
   
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GenoViz

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  Analyzed about 14 hours ago

The GenoViz project provides tools for genomics data visualization. It consists of the following: 1) the GenoViz SDK, a library of re-usable components, 2) the Genometry data model to represent relationships between biological sequences, and 3) the Integrated Genome Browser (IGB, "igbee"), an ... [More] application built upon the GenoViz SDK and Genometry for visualization and exploration of genomes and corresponding annotations from multiple data sources. IGB supports the Distributed Annotation System (DAS) protocol, version 1 and 2, as well as other optimized binary data formats that are designed for efficient exploration of large, whole genome data sets. [Less]

187K lines of code

35 current contributors

10 months since last commit

4 users on Open Hub

Very Low Activity
5.0
 
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PathVisio

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  No analysis available

Utility for creating / edit biological pathways and and visualizing high-throughput data (e.g. microarray data) in the context of pathways.

0 lines of code

0 current contributors

0 since last commit

4 users on Open Hub

Activity Not Available
0.0
 
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Mostly written in language not available
Licenses: apache_2

JOELib

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  Analyzed about 8 hours ago

JOELib/JOELib2 is a cheminformatics library which supports SMARTS substructure search, descriptor calculation, processing/filtering pipes, conversion of file formats, 100% pure Java, and interfaces to external programs (e.g. Ghemical) are available.

180K lines of code

0 current contributors

about 17 years since last commit

3 users on Open Hub

Inactive
4.5
   
I Use This

Generic Model Organism Database Project

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  No analysis available

This project is to develop a set of software modules to be used to develop a generic model organism system database. Such databases contain information about the genomes and biology of laboratory organisms.

0 lines of code

0 current contributors

0 since last commit

2 users on Open Hub

Activity Not Available
5.0
 
I Use This
Mostly written in language not available
Licenses: gpl