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Analyzed about 3 hours ago. based on code collected about 3 hours ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Feb 21, 2025 — Feb 21, 2026 Showing page 32 of 136 Search / Filter on:
Refactored to work with new aliquots data structures in warehouse2 - first attempt!	Jim Stalker	More...				over 14 years ago
Merge pull request #20 from CraigPorter/single-end	CraigPorter	More...				over 14 years ago
Import single-ended fastqs as LaneName_1.fastq	Craig Porter	More...				over 14 years ago
Merge pull request #19 from CraigPorter/pipeline	CraigPorter	More...				over 14 years ago
Changed from samtools pileup to mpileup for finding genome coverage in Fastq QC pipeline.	Craig Porter	More...				over 14 years ago
Changed from samtools pileup to mpileup for finding genome coverage in Fastq QC pipeline.	Craig Porter	More...				over 14 years ago
Merge branch 'develop' of /software/vertres/git/origin/vr-codebase into develop	Thomas Keane	More...				over 14 years ago
added print of found genotype	Thomas Keane	More...				over 14 years ago
Merge pull request #18 from CraigPorter/pipeline-test	CraigPorter	More...				over 14 years ago
Merge branch 'develop' into pipeline-test	Craig Porter	More...				over 14 years ago
Merge pull request #17 from CraigPorter/pipeline	CraigPorter	More...				over 14 years ago
Merge pull request #16 from andrewjpage/pipeline	andrewjpage	More...				over 14 years ago
Merge pull request #28 from CraigPorter/mapping	Sendu Bala	More...				over 14 years ago
Fix: handle large empty (N-only) regions in GC-depth calculation	Petr Danecek	More...				over 14 years ago
Fix: handle large empty (N-only) regions in GC-depth calculation	Petr Danecek	More...				over 14 years ago
Minor change in plot	Petr Danecek	More...				over 14 years ago
Allow override of runtime limits	Petr Danecek	More...				over 14 years ago
Merge branch 'develop' of /software/vertres/git/origin/vr-codebase into develop	Petr Danecek	More...				over 14 years ago
New option -p to plot the stats	Petr Danecek	More...				over 14 years ago
Limit maximum VCF line len by setting MAX_VCF_LINE_LEN environment variable	Petr Danecek	More...				over 14 years ago
Stratify by depth; Create AF and DP graphs	Petr Danecek	More...				over 14 years ago
Added a throw if a slice can't be built	Jim Stalker	More...				over 14 years ago
Added CL tags to bam file from Mapping pipeline.	Craig Porter	More...				over 14 years ago
Added CL tags to bam file from Mapping pipeline.	Craig Porter	More...				over 14 years ago
Merge branch 'develop' of /software/vertres/git/origin/vr-codebase into develop	Petr Danecek	More...				over 14 years ago
Allow multiple user-defined filters for the same tag	Petr Danecek	More...				over 14 years ago
Merge branch 'develop' of /software/vertres/git/origin/vr-codebase into develop	Chris joyce	More...				over 14 years ago
inital commit. rolling merge-up/split-bam seems to be working.	Shane McCarthy	More...				over 14 years ago
skip filtering if filter option unset	Shane McCarthy	More...				over 14 years ago
system call was complaining if too many files on the command line. loop through list now instead	Shane McCarthy	More...				over 14 years ago

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