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Analyzed 1 day ago. based on code collected 1 day ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Feb 24, 2025 — Feb 24, 2026 Showing page 35 of 136 Search / Filter on:
Merge pull request #5 from andrewjpage/pipeline	andrewjpage	More...				over 14 years ago
Merge branch 'pipeline' of github.com:sanger-pathogens/vr-codebase into pipeline	andrewjpage	More...				over 14 years ago
Print fraction of lines lifted over on output	Petr Danecek	More...				over 14 years ago
temporary bam needs to be indexed in order to parse to a particular region	Shane McCarthy	More...				over 14 years ago
Merge branch 'develop' of /software/vertres/git/origin/vr-codebase into develop	Shane McCarthy	More...				over 14 years ago
add checks to extract intervals in order to catch failures	Shane McCarthy	More...				over 14 years ago
allow limits option for import pipeline	Shane McCarthy	More...				over 14 years ago
Merge pull request #21 from CraigPorter/get_genome_coverage	Sendu Bala	More...				over 14 years ago
Reports cache hits and misses when using -i	Jim Stalker	More...				over 14 years ago
Added --studies flag so minimal output given when no flags are used for pipeline use	John Maslen	More...				over 14 years ago
Merge pull request #6 from CraigPorter/pipeline_get_genome_coverage	CraigPorter	More...				over 14 years ago
added sleep between process startups	Thomas Keane	More...				over 14 years ago
LSF runner/manager script for retroseq added	Thomas Keane	More...				over 14 years ago
Merge branch 'develop' of /software/vertres/git/origin/vr-codebase into develop	Petr Danecek	More...				over 14 years ago
Use new samtools header files	Petr Danecek	More...				over 14 years ago
Changed CSQ separator back to '+', so that the extra cons (GERP, PolyPhen, etc) can be tool,value instead of tool=value which is invalid VCF and doesn't parse when using cache vcf	Jim Stalker	More...				over 14 years ago
queue option was not being recognised in the options hash and was defaulting to normal queue	Thomas Keane	More...				over 14 years ago
Merge branch 'develop' of /software/vertres/git/origin/vr-codebase into develop	Petr Danecek	More...				over 14 years ago
Run without reference panel	Petr Danecek	More...				over 14 years ago
Added get_genome_coverage option to mapping pipeline.	Craig Porter	More...				over 14 years ago
Added get_genome_coverage option to mapping pipeline.	Craig Porter	More...				over 14 years ago
Merge pull request #19 from CraigPorter/qc-fastq-mapper	Sendu Bala	More...				over 14 years ago
Change database name due to temporary db problem	Jim Stalker	More...				over 14 years ago
Merge branch 'develop' of /software/vertres/git/origin/vr-codebase into develop	Petr Danecek	More...				over 14 years ago
Fix in AC calculation for #GC plots	Petr Danecek	More...				over 14 years ago
Merge branch 'develop' of /software/vertres/git/origin/vr-codebase into develop	Thomas Keane	More...				over 14 years ago
Added -f option	Petr Danecek	More...				over 14 years ago
Merge branch 'develop' of /software/vertres/git/origin/vr-codebase into develop	Chris joyce	More...				over 14 years ago
Merge branch 'develop' of /software/vertres/git/origin/vr-codebase into develop	Petr Danecek	More...				over 14 years ago
Allow -a without -d; Make POS a synonym of FROM	Petr Danecek	More...				over 14 years ago

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