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Analyzed about 6 hours ago. based on code collected about 6 hours ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Feb 22, 2025 — Feb 22, 2026 Showing page 36 of 136 Search / Filter on:
add sql migration to move to version 15	andrewjpage	More...				over 14 years ago
Merge branch 'tradis_tags' into pipeline	andrewjpage	More...				over 14 years ago
Merge branch 'pipeline' of github.com:sanger-pathogens/vr-codebase into pipeline	andrewjpage	More...				over 14 years ago
bracket in wrong place	andrewjpage	More...				over 14 years ago
add percentage_reads_with_transposon to fields	andrewjpage	More...				over 14 years ago
correct generation of _transposon.pl script	andrewjpage	More...				over 14 years ago
correctly declare lane	andrewjpage	More...				over 14 years ago
Fixed issue where dbSNP_rod needed setting for gatk variant recal to occur. Now have a 'have_dbSNP' flag which indicates we've got dbSNP set somewhere.	Jim Stalker	More...				over 14 years ago
make unziping fastq work for transposons	[email protected]	More...				over 14 years ago
rename tradis module in lsf code	andrewjpage	More...				over 14 years ago
add transposon percentage to mapstats and create lsf job	andrewjpage	More...				over 14 years ago
Merge branch 'develop' of /software/vertres/git/origin/vr-codebase into develop	Thomas Keane	More...				over 14 years ago
rename tradis transposon to transposon	andrewjpage	More...				over 14 years ago
Changed consequence delimiter from '+' back to ','	Jim Stalker	More...				over 14 years ago
modified vcf2consequences_lsf for gz	Chris joyce	More...				over 14 years ago
find percentage of tags in reads for tradis	andrewjpage	More...				over 14 years ago
Merge branch 'develop' into pipeline	andrewjpage	More...				over 14 years ago
remove hardcoded database name	andrewjpage	More...				over 14 years ago
check if is paired is defined	andrewjpage	More...				over 14 years ago
pass is_paired into smalt generate sam	andrewjpage	More...				over 14 years ago
smalt single ended mapping	andrewjpage	More...				over 14 years ago
mapping bam to fastq needs to take single ended	andrewjpage	More...				over 14 years ago
sym link gz fastq md5 hash	andrewjpage	More...				over 14 years ago
Now skips #0.bam files (these are the unassigned reads where the tag couldn't be identified in deplexing)	Jim Stalker	More...				over 14 years ago
check for string instead of number	andrewjpage	More...				over 14 years ago
remove extra round bracket	andrewjpage	More...				over 14 years ago
dont plot reverse reads for gc content	andrewjpage	More...				over 14 years ago
Correcting permissions again	John Maslen	More...				over 14 years ago
missing semicolon in plot bamcheck	andrewjpage	More...				over 14 years ago
Correcting permissions....	John Maslen	More...				over 14 years ago

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