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Analyzed 1 day ago. based on code collected 2 days ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Nov 05, 2025 — Nov 05, 2026 Showing page 159 of 243 Search / Filter on:
Updated GenbankReader and files to properly handle AbstractSequence and Compound types. Added testcase for DNASequence/Nucleotide sequence.	Karl Nicholas	More...				over 13 years ago
Added simple Genbank reader. Update CommandPrompt to use the Genbank reader for .gb files. The code is just done as a first pass for proof of concept.	Karl Nicholas	More...				over 13 years ago
Ran cleanup on AtomCache.	dmyersturnbull	More...				over 13 years ago
Made a general-purpose public method getAminoAcidSubstitutionMatrix(String).	dmyersturnbull	More...				over 13 years ago
Merge pull request #8 from rylarson/master	Andreas Prlic	More...				over 13 years ago
Changing note value to "text" type because hsqldb 2.3.0 tries to store it as VARCHAR and for long value's, throws a right truncation exception.	Ryan Larson	More...				over 13 years ago
Some of the URLs and Ids were swapped; critical fix.	dmyersturnbull	More...				over 13 years ago
Critical null check of soft reference.	dmyersturnbull	More...				over 13 years ago
Merge branch 'master' of https://github.com/dmyersturnbull/biojava.git	dmyersturnbull	More...				over 13 years ago
Added caching using soft references in a multiton pattern. Commented. Added two constructors for non-standard needs, allowing future ASTRAL sets and parsing of local files.	dmyersturnbull	More...				over 13 years ago
[maven-release-plugin] prepare for next development iteration	Michael Heuer	More...				over 13 years ago
Merge branch 'master' of https://github.com/biojava/biojava-legacy	Michael Heuer	More...				over 13 years ago
[maven-release-plugin] rollback the release of biojava-legacy-1.8.3	Michael Heuer	More...				over 13 years ago
[maven-release-plugin] prepare release biojava-legacy-1.8.3	Michael Heuer	More...				over 13 years ago
Merge pull request #7 from heuermh/master	Michael Heuer as Michael L Heuer	More...				over 13 years ago
update with release configuration from biojava/pom.xml; use default for legacy repo	Michael Heuer	More...				over 13 years ago
update with release configuration from biojava/pom.xml; add snapshot repository, remove svn tag base, add license, etc.	Michael Heuer	More...				over 13 years ago
update scm configuration from svn --> github	Michael Heuer	More...				over 13 years ago
Swapped expected and test values, and added comments.	dmyersturnbull	More...				over 13 years ago
updating version info	Andreas Prlic	More...				over 13 years ago
[maven-release-plugin] prepare for next development iteration	Andreas Prlic	More...				over 13 years ago
[maven-release-plugin] prepare release biojava-3.0.6	Andreas Prlic	More...				over 13 years ago
Merge branch 'master' of github.com:biojava/biojava	Andreas Prlic	More...				over 13 years ago
now using 4HHB as a standard example	Andreas Prlic	More...				over 13 years ago
adding new calcRotationAngleInDegrees	Andreas Prlic	More...				over 13 years ago
Added an argument strictLigandHandling to getStructureForDomains, and made this normally false.	dmyersturnbull	More...				over 13 years ago
Made getStructureForScopDomain correctly handle ligands in multi-chain domains. Also introduced a test for AtomCache.	dmyersturnbull	More...				over 13 years ago
Made AtomPositionMap constructor take a GroupMatcher, which is a new callback inner interface.	dmyersturnbull	More...				over 13 years ago
Added a match(String) method, and added some argument checks.	dmyersturnbull	More...				over 13 years ago
Don't allow a period (.) as a range specifier. Really we should reserve periods as chain specifiers, and allow either _ or : as range specifiers.	dmyersturnbull	More...				over 13 years ago

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