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Analyzed 1 day ago. based on code collected 3 days ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Nov 05, 2025 — Nov 05, 2026 Showing page 163 of 243 Search / Filter on:
Set matrix and shift vector in AFPChain as well as AFP.	dmyersturnbull	More...				over 13 years ago
Assume lower-case letters are unaligned.	dmyersturnbull	More...				over 13 years ago
Fixing broken build.	dmyersturnbull	More...				over 13 years ago
Merge branch 'master' of https://github.com/biojava/biojava	dmyersturnbull	More...				over 13 years ago
Calculate and set RMSD. Do SVD rather than rely on AFPChainScorer.	dmyersturnbull	More...				over 13 years ago
Removing hard-coded PDB_DIR settings.	sbliven as Spencer Bliven	More...				over 13 years ago
Added tmScore to expected AFPChain.	dmyersturnbull	More...				over 13 years ago
Set TM-score.	dmyersturnbull	More...				over 13 years ago
Throw an exception if a structure or sequence is null (just safer).	dmyersturnbull	More...				over 13 years ago
There's no reason to require the structures have different names or even have non-null names.	dmyersturnbull	More...				over 13 years ago
Finished test for FastaAFPChainConverter.	dmyersturnbull	More...				over 13 years ago
Simplified FastaAFPChainConverter substantially, and fixed it.	dmyersturnbull	More...				over 13 years ago
Added XMLUnit to POM.	dmyersturnbull	More...				over 13 years ago
Committing unfinished FastaAFPChainConverter and test.	dmyersturnbull	More...				over 13 years ago
Adding header comment.	dmyersturnbull	More...				over 13 years ago
Do Smith-Waterman local alignment rather than global alignment (comment says local, too). Also, skip null residues in getSubstructureMatchingProteinSequence.	dmyersturnbull	More...				over 13 years ago
Added a method getSubstructureMatchingProteinSequence and a test case for it. Added @Test annotations to tests in StructureSequenceMatcherTest (why weren't they there?).	dmyersturnbull	More...				over 13 years ago
Made ResidueRange more robust, and gave it some methods for iterating, finding, and checking containment.	dmyersturnbull	More...				over 13 years ago
ResidueNumber.printFull() is missing an underscore after chainId.	dmyersturnbull	More...				over 13 years ago
Merge branch 'master' of github.com:biojava/biojava	Andreas Prlic	More...				over 13 years ago
Merge branch 'master' of github.com:andreasprlic/biojava	Andreas Prlic	More...				over 13 years ago
making inpustream access method public	Andreas Prlic	More...				over 13 years ago
less verbose	Andreas Prlic	More...				over 13 years ago
Merge branch 'master' of https://github.com/biojava/biojava-legacy	Michael Heuer	More...				over 13 years ago
Accept lower-case amino acid single-letter codes.	dmyersturnbull	More...				over 13 years ago
Accept lower-case amino acid single-letter codes.	dmyersturnbull	More...				over 13 years ago
Merge pull request #5 from biojava/master	Amr AL-HOSSARY	More...				over 13 years ago
Merge pull request #26 from aalhossary/master	Amr AL-HOSSARY	More...				over 13 years ago
Merge pull request #24 from andreasprlic/master	Andreas Prlic	More...				over 13 years ago
updating to latest branch.	Andreas Prlic	More...				over 13 years ago

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