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Analyzed 1 day ago. based on code collected 2 days ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Nov 05, 2025 — Nov 05, 2026 Showing page 150 of 243 Search / Filter on:
Merge pull request #12 from biojava/master	emckee2006	More...				almost 13 years ago
Merge pull request #83 from dmyersturnbull/master	emckee2006	More...				almost 13 years ago
Deleted StructureFactory; we have a better solution to issue #81.	dmyersturnbull	More...				almost 13 years ago
Added a caution note for StructureImpl.getHetGroups().	dmyersturnbull	More...				almost 13 years ago
Fixed use of assertEquals() on doubles.	dmyersturnbull	More...				almost 13 years ago
Merge branch 'master' of https://github.com/biojava/biojava	dmyersturnbull	More...				almost 13 years ago
Merge pull request #87 from pwrose/master	Andreas Prlic	More...				almost 13 years ago
if params.setParseCAOnly(true) and params.setCreateAtomBonds(true) are set, some bonds specified in LINK records or SSBOND records cannot be set (atoms are not there). In these cases StructureException should not be thrown.	Peter Rose	More...				almost 13 years ago
Merge pull request #11 from biojava/master	emckee2006	More...				almost 13 years ago
Merge pull request #86 from pwrose/master	Andreas Prlic	More...				almost 13 years ago
Added getO3Prime(), getO5Prime(), and getP() methods.	Peter Rose	More...				almost 13 years ago
Wrote a SubstitutionMatrixScorer.	dmyersturnbull	More...				almost 13 years ago
Added getRow() and getColumn() methods to SubstitutionMatrix.	dmyersturnbull	More...				almost 13 years ago
Merge pull request #84 from d-cameron/master	Andreas Prlic	More...				almost 13 years ago
Merge branch 'master' of https://github.com/biojava/biojava	dmyersturnbull	More...				almost 13 years ago
Fixed issue #85.	dmyersturnbull	More...				almost 13 years ago
Wrote a fromConciseAlignmentString method.	dmyersturnbull	More...				almost 13 years ago
FractionalSimilarityScorer was actually identical to FractionalIdentityScorer.	dmyersturnbull	More...				almost 13 years ago
Refactored alignment to allow anchored compounds for all global alignments Replaced setSteps(int[] anchor) algorithm due to design flaw (information lost in anchor conversion: not possible to get steps from anchors {(1,1), (3,3)} as alignment could 1-23 or 12-3) Added aligner.addAnchor() for addition of single anchors Refactored some alignment internal method signatures to improve code readability Improved test coverage Bug fix: #78	d-cameron	More...				almost 13 years ago
adding more docu to the package descriptions	Andreas Prlic	More...				almost 13 years ago
Commented out print statement.	dmyersturnbull	More...				almost 13 years ago
Additional GuanUberbacher test coverage	d-cameron	More...				almost 13 years ago
Bug fix: Cut query positions are no longer outside the bounds of the subproblem	d-cameron	More...				almost 13 years ago
Refactored subproblem bounds from int[4] into a Subproblem class to improve code readability	d-cameron	More...				almost 13 years ago
Alignments of zero length return a null Location instead of crashing during alignment	d-cameron	More...				almost 13 years ago
Merge branch 'master' of https://github.com/d-cameron/biojava	d-cameron	More...				almost 13 years ago
Added multiple test cases for various alignment bugs including #81	d-cameron	More...				almost 13 years ago
Added multiple test cases for various alignment bugs including #78	d-cameron	More...				almost 13 years ago
Compounds not included in the scoring matrix will default to the alternative case of the compound if it exists in the scoring matrix instead of the min matrix value	d-cameron	More...				almost 13 years ago
Merge branch 'master' of https://github.com/biojava/biojava	dmyersturnbull	More...				almost 13 years ago

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