| Method to transform Atom[] arrays in Calc |
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over 11 years ago
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| MultipleAlignment.toString() generates alignment summary |
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over 11 years ago
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| Merge branch 'minor' |
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over 11 years ago
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| Merge pull request #279 from josemduarte/minor |
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over 11 years ago
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| Adding Structure.toMMCIF, #188 |
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over 11 years ago
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| More complete implementation of CIF writing, #188. Now we can also write single-record CIF categories. |
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over 11 years ago
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| Delete unneccessary Exceptions |
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over 11 years ago
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| Finally fixing #234. This includes an important bug fix for mmCIF parser: quoted strings appearing at the end of a line with no trailing spaces were not parsed correctly (the last quote character was included in the string). Trailing spaces are not a requirement of the CIF format, thus the parser needs to really work in those cases. |
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over 11 years ago
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| Fix buf with AFPChain to MultipleAlignment conversion |
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over 11 years ago
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| Move code to align.multiple package and rename classes #278 |
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over 11 years ago
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| Fix bug with 4D Transformation Calc |
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over 11 years ago
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| Major change of the mmcif parser: now it copes with comments and empty lines. All tests pass |
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over 11 years ago
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| Merge pull request #36 from biojava/master |
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over 11 years ago
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| Fixed issue: wasn't treating properly some CIF quoting cases |
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over 11 years ago
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| Towards solving #234. The parser now does the correct job for phenix files, still processSingleLine() has issues with corner case quoting |
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over 11 years ago
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| Now warning when no _struct_asym found |
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over 11 years ago
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| Now the mmcif parser can read a bare-bones mmcif file. |
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over 11 years ago
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| Removing getAlnSequences from MultipleAlignment |
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over 11 years ago
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| Now actually testing something, test doesn't pass yet |
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over 11 years ago
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| Prettier mmCIF output with all columns adjusted to their sizes |
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over 11 years ago
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| Basic implementation of mmcif writing |
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over 11 years ago
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| Fixing compilation errors |
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over 11 years ago
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| Merge branch 'minor' |
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over 11 years ago
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| Adding missing translation method |
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over 11 years ago
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| Merge remote-tracking branch 'lafita/multaln' into multaln |
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over 11 years ago
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| Updates to the MultipleAlignmentEnsemble hierarchy |
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over 11 years ago
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| Connect MultipleAlignment AligPanel and Jmol |
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over 11 years ago
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| Changes in AligPanel for MultipleAlignments |
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over 11 years ago
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| Restore the AligPanel for AFPChain |
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over 11 years ago
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| Add AtomCache.getRepresentativeAtoms |
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over 11 years ago
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