BioJava

Settings | Report Duplicate

14

I Use This!

Moderate Activity

Commits : Listings

Analyzed 1 day ago. based on code collected 3 days ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Nov 05, 2025 — Nov 05, 2026 Showing page 113 of 243 Search / Filter on:
Added properties Double percentageIdentity, Integer mismatchCount. They are loaded or calculated if possible. All properties primitive types where converted into their corresponded Objects type to allow null values that will represent missing values in report.	Paolo Pavan	More...				over 11 years ago
Adding some more non-deposited files tests, #305. Also reverting mmcif parser to not remove purely non-poly chains. Like that it matches what the pdb parser does.	josemduarte	More...				over 11 years ago
Reverting parser change: removing pure non-poly chains is a bad idea. Now all non-poly chains will be ignored in compound finder, #305	josemduarte	More...				over 11 years ago
More parsing fixes, #305	josemduarte	More...				over 11 years ago
Changed method name from getFactory() to more explicative guessFactory()	Paolo Pavan	More...				over 11 years ago
Merge remote-tracking branch 'upstream/master'	josemduarte	More...				over 11 years ago
Better parsing of COMPND lines in PDB files, #305	josemduarte	More...				over 11 years ago
Fixing tests: order of AbstractScoresCache.getScores wasn't guaranteed and the test was failing in some computers	josemduarte	More...				over 11 years ago
Fix bug with flexible MultipleAlignments	lafita	More...				over 11 years ago
Rename and move Tests for consistency	lafita	More...				over 11 years ago
Merge branch 'master' of https://github.com/biojava/biojava.git	lafita	More...				over 11 years ago
Remove the 3D transformations in MultipleAlignment	lafita	More...				over 11 years ago
Updating SCOPe to version 2.05	sbliven as Spencer Bliven	More...				over 11 years ago
Factor out Subunits definition in quaternary symmetry	lafita	More...				over 11 years ago
test improvement.	Paolo Pavan	More...				over 11 years ago
Add method to output alignments in I-TASSER 3D Format	sbliven as Spencer Bliven	More...				over 11 years ago
Added Hsp.getAlignment() test	Paolo Pavan	More...				over 11 years ago
Adding sortBlocks method	sbliven as Spencer Bliven	More...				over 11 years ago
Need to add a dependency from biojava-alignment. This could be avoided importing in biojava core the alignment data structures present in biojava-alignment.	Paolo Pavan	More...				over 11 years ago
first version of getAlignment() method. It reconstruct an alignment from Hsp alignment strings.	Paolo Pavan	More...				over 11 years ago
Calc.transform() documentation and testing	lafita	More...				over 11 years ago
Added a test resource.	Paolo Pavan	More...				over 11 years ago
comment fix	Paolo Pavan	More...				over 11 years ago
Updated after interface modification	Paolo Pavan	More...				over 11 years ago
Introduced conceptual comparisons of search results	Paolo Pavan	More...				over 11 years ago
Updated interface to allow also Results persistence (storing).	Paolo Pavan	More...				over 11 years ago
Added first prototype of tests	Paolo Pavan	More...				over 11 years ago
Unify Vecmath to JAMA conversion methods in Calc	lafita	More...				over 11 years ago
Fix bug in jama to vecmath conversion	lafita	More...				over 11 years ago
Core length used as the the min block length	lafita	More...				over 11 years ago

←
1
2
…
109
110
111
112
113
114
115
116
117
…
242
243
→