Open Hub
Open Hub

Tags : Browse Projects

Select a tag to browse associated projects and drill deeper into the tag cloud.

The Ray Parallel Genome Assembler

Compare

  Analyzed about 1 hour ago

Ray assembler Ray is a parallel de novo genome assembler that utilises the message-passing interface everywhere and is implemented using peer-to-peer communication. Ray is implemented using the Ray Platform, a message-passing-interface programming framework. Ray is documented in ... [More] Documentation/ (many files) MANUAL_PAGE.txt (command-line options, same as Ray -help) README.md (general) INSTALL.txt (quick installation) Solutions (all bundled in a single Product called Ray) de novo genome assembly (original Ray Technology, re-branded to géno-Ray Technology) quantification of contig abundance (con-Ray Technology) de novo transcriptome assembly (trans-Ray Technology) quantification of transcript expression (express-Ray Technology) de novo meta-genome assembly (méta-Ray Technology) quantificati [Less]

41.2K lines of code

0 current contributors

about 8 years since last commit

0 users on Open Hub

Inactive
5.0
 
0 Reviews
I Use This
Mostly written in C++
Licenses: gpl3
Tags assembly cluster distributed genomics metagenomics mpi reads scalable sequences

CytoscapeRPC

Compare

  Analyzed over 1 year ago

A Cytoscape plugin which allows programmers to access Cytoscape through XML-RPC.

7.25K lines of code

0 current contributors

over 13 years since last commit

0 users on Open Hub

Activity Not Available
0.0
 
0 Reviews
I Use This
Mostly written in Java
Licenses: lgpv3_or_...
Tags bioassist bioinformatics cytoscape genomics

Genome Savant

Compare

  Analyzed about 18 hours ago

Savant is a next-generation genome browser designed for the latest generation of genome data.

109K lines of code

0 current contributors

over 9 years since last commit

0 users on Open Hub

Inactive
0.0
 
0 Reviews
I Use This
Mostly written in Java
Licenses: lgpl21_or...
Tags bioinformatics genomeanalysis genomeannotation genomebrowsers genomics java visualization

ngs

Compare

  Analyzed 1 day ago

Next generation sequencing (NGS/HTS) tools.

32.6K lines of code

0 current contributors

about 5 years since last commit

0 users on Open Hub

Inactive
0.0
 
0 Reviews
I Use This
Mostly written in Java
Licenses: lgpv3_or_...
Tags alignment bioinformatics genomics hts ngs tools variation

genbench

Compare

  Analyzed 1 day ago

Realworld Genomics Benchmarks for R, forked from GenBase and inspired by the original GenBase.

5.8K lines of code

0 current contributors

almost 10 years since last commit

0 users on Open Hub

Inactive
5.0
 
0 Reviews
I Use This
Mostly written in R
Licenses: No declared licenses
Tags benchmark bioinformatics genomics NGS R

isa-api

Compare

  Analyzed 1 day ago

The open source ISA metadata tracking tools help to manage an increasingly diverse set of life science, environmental and biomedical experiments that employing one or a combination of technologies. Built around the ‘Investigation’ (the project context), Study’ (a unit of research) and ‘Assay’ ... [More] (analytical measurement) general-purpose Tabular format, the ISA tools helps you to provide rich description of the experimental metadata (i.e. sample characteristics, technology and measurement types, sample-to-data relationships) so that the resulting data and discoveries are reproducible and reusable. To find out more about ISA, see www.isa-tools.org [Less]

354K lines of code

4 current contributors

6 months since last commit

0 users on Open Hub

Very Low Activity
0.0
 
0 Reviews
I Use This
Mostly written in JavaScript
Licenses: cpal
Tags annotation bioinformatics biology biomedical-data-standards data data_formats data_integration genomics json lifescience metabolomics metadata 5 more...