de novo genome assembly is now a challenge because of the overwhelming amount of data produced by sequencers. Ray assembles reads obtained with new sequencing technologies (Illumina, 454, SOLiD) using MPI 2.2 -- a message passing inferface standard.
Ray assembler
Ray is a parallel de novo genome assembler that utilises the message-passing interface everywhere and is implemented using peer-to-peer communication.
Ray is implemented using the Ray Platform, a message-passing-interface programming framework.
Ray is documented in
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Documentation/ (many files)
MANUAL_PAGE.txt (command-line options, same as Ray -help)
README.md (general)
INSTALL.txt (quick installation)
Solutions (all bundled in a single Product called Ray)
de novo genome assembly (original Ray Technology, re-branded to géno-Ray Technology)
quantification of contig abundance (con-Ray Technology)
de novo transcriptome assembly (trans-Ray Technology)
quantification of transcript expression (express-Ray Technology)
de novo meta-genome assembly (méta-Ray Technology)
quantificati [Less]
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