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Analyzed 21 minutes ago. based on code collected about 1 hour ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Feb 07, 2025 — Feb 07, 2026 Showing page 13 of 136 Search / Filter on:
output alignment as sam instead of bam	andrewjpage	More...				almost 14 years ago
specify output directory	andrewjpage	More...				almost 14 years ago
generate sam input params order changed	andrewjpage	More...				almost 14 years ago
copy bwa tests to tophat	andrewjpage	More...				almost 14 years ago
Fix to TrackQC_Fastq - throws properly when cannot write cover file.	Craig Porter	More...				almost 14 years ago
Fix to run_status check for VertRes::Utils::Sam->coverage() and coverage_depth().	Craig Porter	More...				almost 14 years ago
correct version calculation	andrewjpage	More...				almost 14 years ago
basic tophat test for version	andrewjpage	More...				almost 14 years ago
initialise orig_exe for tophat	andrewjpage	More...				almost 14 years ago
version for tophat	andrewjpage	More...				almost 14 years ago
Merge branch 'develop' of /software/vertres/git/origin/vr-codebase into develop	Jim Stalker	More...				almost 14 years ago
tracking scripts for uk10k	Jim Stalker	More...				almost 14 years ago
fix - remove file close	Chris joyce	More...				almost 14 years ago
pass in insert size and intron length	andrewjpage	More...				almost 14 years ago
Merge branch 'pipeline' into tophat	andrewjpage	More...				almost 14 years ago
Merge pull request #61 from CraigPorter/import_validation	CraigPorter	More...				almost 14 years ago
Fixed a typo: the haps confidence files were always undefined	Petr Danecek	More...				almost 14 years ago
Import_iRODS_fastq pipeline validates compressed fastq against iRODS metadata.Import_iRODS_fastq pipeline validates compressed fastq against iRODS metadata.	Craig Porter	More...				almost 14 years ago
Remove and annotate in one go; Support for removal also from ID,QUAL,FILTER columns	Petr Danecek	More...				almost 14 years ago
Updated docs	Petr Danecek	More...				almost 14 years ago
On demand: The FILTER column can be now set from annotation file	Petr Danecek	More...				almost 14 years ago
Bug fix: replaced hard-wired year of 2010	Petr Danecek	More...				almost 14 years ago
New -t option: use tabix to avoid chromosome ordering problems	Petr Danecek	More...				almost 14 years ago
Added explicit DEFAULTS to schema. This is for new mysql servers that have strict SQL set, and so default to NULL even for NOT NULL columns.	Jim Stalker	More...				almost 14 years ago
Merge pull request #60 from andrewjpage/tweak_rna_seq_lanes	andrewjpage	More...				almost 14 years ago
reset an rnaseq lane	andrewjpage	More...				almost 14 years ago
Merge pull request #59 from andrewjpage/fall_back_to_id_in_feature	andrewjpage	More...				almost 14 years ago
use ID tag for feature if locus tag missing	andrewjpage	More...				almost 14 years ago
Merge pull request #58 from andrewjpage/dont_wait_for_lsf_jobs_in_import	andrewjpage	More...				almost 14 years ago
dont wait for bam_to_fastq lsf jobs after submit	andrewjpage	More...				almost 14 years ago

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