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Analyzed 1 day ago. based on code collected 1 day ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Feb 07, 2025 — Feb 07, 2026 Showing page 17 of 136 Search / Filter on:
pass in self	andrewjpage	More...				about 14 years ago
typo in expression	andrewjpage	More...				about 14 years ago
dummy alignement slice for strand specific protocol	andrewjpage	More...				about 14 years ago
output sequence id in expression spreadsheet	andrewjpage	More...				about 14 years ago
rnaseq pipeline syntax errors	andrewjpage	More...				about 14 years ago
run pipeline with rna seq and cleanup/updatedb	andrewjpage	More...				about 14 years ago
make non standard gff work	andrewjpage	More...				about 14 years ago
coverage plot flag, non standard gff parsing	andrewjpage	More...				about 14 years ago
Merge pull request #46 from andrewjpage/fix_java_memory	andrewjpage	More...				about 14 years ago
properly set java meomry	andrewjpage	More...				about 14 years ago
initial rnaseq pipeline	andrewjpage	More...				about 14 years ago
allow samtools exec to be passed through	andrewjpage	More...				about 14 years ago
delete temp files from coverage test	andrewjpage	More...				about 14 years ago
create plots and pass output file	andrewjpage	More...				about 14 years ago
Merge branch 'rna-seq' of github.com:andrewjpage/vr-codebase into rna-seq	andrewjpage	More...				about 14 years ago
smaller test bam and bug fixes for coverage plots	andrewjpage	More...				about 14 years ago
smaller test bam and bug fixes for coverage plots	andrewjpage	More...				about 14 years ago
coverage plots first commit	andrewjpage	More...				about 14 years ago
Merge branch 'develop' of /software/vertres/git/origin/vr-codebase into develop	Shane McCarthy	More...				about 14 years ago
close quotes in vcf-annotate description	Shane McCarthy	More...				about 14 years ago
index bam file with changed bitwise flags	andrewjpage	More...				about 14 years ago
check seq names in gff are in bam not other way around	andrewjpage	More...				about 14 years ago
updated bitwise flags in bam	andrewjpage	More...				about 14 years ago
fix tests for valiation of inputs	andrewjpage	More...				about 14 years ago
validate inputs	andrewjpage	More...				about 14 years ago
typo in sequence read filename	andrewjpage	More...				about 14 years ago
fix tests for read strand	andrewjpage	More...				about 14 years ago
count forward and reverse reads	andrewjpage	More...				about 14 years ago
allow for different protocols	andrewjpage	More...				about 14 years ago
read filters with mapping quality as the first	andrewjpage	More...				about 14 years ago

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