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Analyzed about 15 hours ago. based on code collected about 16 hours ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Feb 10, 2025 — Feb 10, 2026 Showing page 11 of 136 Search / Filter on:
Allow comment lines (#) in the targets file	Petr Danecek	More...				almost 14 years ago
Fix buffer overflow for 100% GC reads	Petr Danecek	More...				almost 14 years ago
Merge branch 'develop' of /software/vertres/git/origin/vr-codebase into develop	Petr Danecek	More...				almost 14 years ago
Fill missing GTs when merging populations	Petr Danecek	More...				almost 14 years ago
updated TrackQC_Bam to use the deprecated plot-bamcheck command	Thomas Keane	More...				almost 14 years ago
Merge branch 'develop' of /software/vertres/git/origin/vr-codebase into develop	Petr Danecek	More...				almost 14 years ago
target regions for exome QC; plot-bamcheck not dependant on backticks anymore	Petr Danecek	More...				almost 14 years ago
add totals to disk usage report	Chris joyce	More...				almost 14 years ago
Merge pull request #72 from CraigPorter/smalt_index_commands	CraigPorter	More...				almost 14 years ago
Smalt wrapper records index command lines for sam/bam header.	Craig Porter	More...				almost 14 years ago
Making identical top genotype check two-way	John Maslen	More...				almost 14 years ago
_all_values_by_field() now takes an optional order by column name, which defaults to row_id (hierarchy_name is more useful, for classes with that column)	Sendu Bala	More...				almost 14 years ago
expanded perldoc for type(), with new suggestion that type 5 means VRPipe:Files and type 6 means cram files	Sendu Bala	More...				almost 14 years ago
avoid undef warning when dealing with illdefined platforms	Sendu Bala	More...				almost 14 years ago
when shuffling chunks use a fixed random seed so rerunning script obeys maxjobs limits	Shane McCarthy	More...				almost 14 years ago
Merge pull request #71 from CraigPorter/spreadsheet	CraigPorter	More...				almost 14 years ago
Removed comments	Craig Porter	More...				almost 14 years ago
Added unit tests to confirm bam2fastq removes intermediate files.	Craig Porter	More...				almost 14 years ago
Additional unit tests for output of mapstats as csv.	Craig Porter	More...				almost 14 years ago
Added unit tests for coverage depth functions in sam utilities module.	Craig Porter	More...				almost 14 years ago
Added modules to output mapstats as csv files.	Craig Porter	More...				almost 14 years ago
VertRes::Utils::Sam->coverage() and coverage_depth() throw if no pileup output	Craig Porter	More...				almost 14 years ago
disk_usage check script	Chris joyce	More...				almost 14 years ago
bugfix in getting determining mergeup hierarchy	Shane McCarthy	More...				almost 14 years ago
Extended docs	Petr Danecek	More...				almost 14 years ago
Enable manual skipping of problematic jobs	Petr Danecek	More...				almost 14 years ago
Warn instead of throwing when deprecated format for unknown number is used	Petr Danecek	More...				almost 14 years ago
Convert to v4.1 by default	Petr Danecek	More...				almost 14 years ago
Leave out (0,0) points from NDR plots	Petr Danecek	More...				almost 14 years ago
Handle situations when two files span the same sites	Petr Danecek	More...				almost 14 years ago

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