The Strategies WDK is a powerful search platform and GUI for 'omics' databases. Mining the data in GUS can be performed using the Strategies-WDK (Fischer et al. Database 2011) to provide a workspace for generating, combining, saving, and sharing “strategies.” Strategies are graphical workflows of
... [More] database searches of record types (such as genes, SNPs, studies) that can be selected (favorites, baskets), combined, and transformed (SNPs to genes, genes to pathways, pathways to chemical compounds). It provides a workspace for generating, combining, saving, and sharing “strategies". [Less]
DIY Genomics is an open source bioinformatics consortium intended to bring a collection of tools and libraries into the hands of small scale genomics labs for the process of sequence assembly and annotation. Projects include DIYA, MGAP, CRISPR, and DIYGV
de novo genome assembly is now a challenge because of the overwhelming amount of data produced by sequencers. Ray assembles reads obtained with new sequencing technologies (Illumina, 454, SOLiD) using MPI 2.2 -- a message passing inferface standard.
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