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srmcollider

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  Analyzed 1 day ago

Computes interferences in SRM (Selected Reaction Monitoring) experiments.

12.8K lines of code

0 current contributors

over 7 years since last commit

1 users on Open Hub

Inactive
0.0
 
0 Reviews
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Mostly written in Python
Licenses: lgpv3_or_...
Tags bioinformatics massspectrometry proteomics python

MOLGENIS model-driven database platform

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  Analyzed 1 day ago

MOLGENIS can be used to generate databases for life science experiments (micrroarray, mass spectrometry, genomics) having a web user interface, csv exchange format, and programmatic interfaces (web services, rest, and r-project). See NatRevGen 8.

484K lines of code

23 current contributors

22 days since last commit

1 users on Open Hub

Very Low Activity
4.0
   
0 Reviews
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Mostly written in Java
Licenses: No declared licenses
Tags bioinformatics biomedical crud database genetics java javascript lifescience online portal research

khmer

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  Analyzed 1 day ago

in-memory k-mer counting

428K lines of code

3 current contributors

over 6 years since last commit

1 users on Open Hub

Inactive
0.0
 
0 Reviews
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Mostly written in C++
Licenses: BSD-3-Clause
Tags bioinformatics biology countminsketch kmer python python2 science

SequenceServer

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  Analyzed about 19 hours ago

A simple web front end to NCBI BLAST+ that lets users share, and consume sequence data intuitively. "The iPod of Blast searching" Set up your local BLAST server in minutes...

551K lines of code

5 current contributors

about 2 months since last commit

1 users on Open Hub

Low Activity
5.0
 
0 Reviews
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Mostly written in JavaScript
Licenses: No declared licenses
Tags ajax alignment bioinformatics blast fasta jquery ncbi ruby sinatra webservice

jcvi

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  Analyzed about 15 hours ago

Utility library to perform analysis for JCVI projects, mostly related to genome assembly or annotations.

63.5K lines of code

4 current contributors

16 days since last commit

1 users on Open Hub

Low Activity
5.0
 
0 Reviews
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Mostly written in Python
Licenses: bsd
Tags bioinformatics genomics python

SGA - String Graph Assembler

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  Analyzed about 18 hours ago

SGA is a de novo genome assembler based on the concept of string graphs. The major goal of SGA is to be very memory efficient, which is achieved by using a compressed representation of DNA sequence reads.

53K lines of code

2 current contributors

about 6 years since last commit

1 users on Open Hub

Inactive
5.0
 
0 Reviews
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Mostly written in C++
Licenses: gpl3
Tags bioinformatics

dishevelled

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  No analysis available

dishevelled.org hosts Free and Open Source libraries for various user interface components and supporting code, with emphasis on views and editors for complex data structures, like collections, sets, lists, maps, graphs, and matrices.

0 lines of code

1 current contributors

0 since last commit

1 users on Open Hub

Activity Not Available
0.0
 
0 Reviews
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Mostly written in language not available
Licenses: lgpl3
Tags analysis bioinformatics biojava biological_networks biology cytoscape data_analysis data_structures data_visualization genomics graphs visualization

Mobyle

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  No analysis available

Mobyle is a framework and web portal specifically aimed at the integration of bioinformatics software and databanks. Mobyle enables the use of local and remote bioinformatics services, seamlessly integrated within a homogeneous and web-accessible environment that focuses on usability. This ... [More] framework offers the possibility of integrating a wide range of services that span from the traditional server-side command-line based programs to workflows and client-based visualization tools. By abstracting whenever possible the user from the details of syntactic compatibility and providing multiple classification tools, Mobyle provides an efficient web-based solution to run and chain bioinformatics analyses. [Less]

0 lines of code

0 current contributors

0 since last commit

1 users on Open Hub

Activity Not Available
0.0
 
0 Reviews
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Mostly written in language not available
Licenses: gpl
Tags ajax bioinformatics framework javascript python soa web workbench workflows

Jalview

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  Analyzed over 1 year ago

A widely used platform for multiple sequence alignment analysis built in Java. Jalview has been developed since 1998, and its development is coordinated by the Barton group at the University Of Dundee, with support from the UK's Biotechnology and Biological Sciences Research Council, The Wellcome ... [More] Trust, and contributions from students supported by The Google Summer Of Code. [Less]

456K lines of code

5 current contributors

over 1 year since last commit

1 users on Open Hub

Activity Not Available
0.0
 
0 Reviews
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Mostly written in Java
Licenses: gpl3
Tags bbsrc bioinformatics biology gsoc java multiplesequencealignment science sequenceanalysis visualisation visualization wellcome

msproteomicstools

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  Analyzed 1 day ago

Some hopefully useful tools for mass spectrometry applied to proteomics

18.7K lines of code

1 current contributors

almost 4 years since last commit

1 users on Open Hub

Inactive
0.0
 
0 Reviews
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Mostly written in Python
Licenses: BSD-3-Clause
Tags bioinformatics massspectrometry proteomics python