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Analyzed about 13 hours ago. based on code collected about 14 hours ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Jan 16, 2025 — Jan 16, 2026 Showing page 5 of 136 Search / Filter on:
Merge branch 'develop' of /software/vertres/git/origin/vr-codebase into develop	Petr Danecek	More...				over 13 years ago
GapWin take advantage of AC when AF not present; use real del length and 1bp for inserts	Petr Danecek	More...				over 13 years ago
add option to force adding readgroup	Shane McCarthy	More...				over 13 years ago
Merge branch 'develop' of /software/vertres/git/origin/vr-codebase into develop	Petr Danecek	More...				over 13 years ago
Include the total number of indels in the statistics	Petr Danecek	More...				over 13 years ago
removing zero counts	John Maslen	More...				over 13 years ago
new script for weekly new lanes report	John Maslen	More...				over 13 years ago
Now annotates also the QUAL column	Petr Danecek	More...				over 13 years ago
Skip HWE calculation at multiallelic sites	Petr Danecek	More...				over 13 years ago
Merge branch 'develop' of /software/vertres/git/origin/vr-codebase into develop	Petr Danecek	More...				over 13 years ago
Handle haploid GLs	Petr Danecek	More...				over 13 years ago
permissions altered	John Maslen	More...				over 13 years ago
script for sql dump compression	John Maslen	More...				over 13 years ago
fix tests	andrewjpage	More...				over 13 years ago
create bamcheck and graphs from bamfile	andrewjpage	More...				over 13 years ago
different spreadsheet headers for standard rna protocol	andrewjpage	More...				over 13 years ago
Added the possibility to add header lines and another example of a user-defined filter.	Petr Danecek	More...				over 13 years ago
updated mapping report tests	Craig Porter	More...				over 13 years ago
Added -f, -F options. Count and plot indels per cycle for each mate pair separately.	Petr Danecek	More...				over 13 years ago
Merge branch 'develop' of /software/vertres/git/origin/vr-codebase into develop	Petr Danecek	More...				over 13 years ago
Significant speedup of event_type for very large REFs and ALTs	Petr Danecek	More...				over 13 years ago
Prevent uninitialized variable warning when DP not present	Petr Danecek	More...				over 13 years ago
the tinkerer returns without a date	John Maslen	More...				over 13 years ago
pass in requested fragment size to bamcheck qc	andrewjpage	More...				over 13 years ago
Merge pull request #87 from CraigPorter/smalt_index_params	CraigPorter	More...				over 13 years ago
Removed redundant custom reference generation for smalt.	Craig Porter	More...				over 13 years ago
Merge pull request #86 from andrewjpage/pipeline	andrewjpage	More...				over 13 years ago
Merge branch 'develop' of /software/vertres/git/origin/vr-codebase into develop	Petr Danecek	More...				over 13 years ago
Wrapper for mouse QC to artifically reduce duplicate rate by ignoring known high-coverage regions	Petr Danecek	More...				over 13 years ago
update is_qc correctly	andrewjpage	More...				over 13 years ago

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