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Analyzed 1 day ago. based on code collected 1 day ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Feb 05, 2025 — Feb 05, 2026 Showing page 133 of 136 Search / Filter on:
Changed the from is_complementary to strand. Using the + / - notation for strand data.	ar12	More...				almost 17 years ago
Removed the clunky param portion of the hash when defining parameters for the wrapper. Made the get/sets more sane to write.	ar12	More...				almost 17 years ago
added back rmdup and rmdup.mapstat to mapping	jstalker	More...				almost 17 years ago
Added back rmdup to audit	jstalker	More...				almost 17 years ago
[no comment]	jstalker	More...				almost 17 years ago
altered fastq truncation checking	jstalker	More...				almost 17 years ago
New version from Li Heng	jstalker	More...				almost 17 years ago
Initialize a new ssaha object with its true default parameters.	ar12	More...				almost 17 years ago
Better checking for alignments. Sequences with no alignments are tagged undef in the return hashref. Cleaned up some pod too.	ar12	More...				almost 17 years ago
Initial commit of code	ar12	More...				almost 17 years ago
Initial commit of utility modules	ar12	More...				almost 17 years ago
Added samtools flagstat to the end of the laneToBAM process	jstalker	More...				almost 17 years ago
Fixed auditHierarchy to output a line for every lane	jstalker	More...				almost 17 years ago
New version of samtools from Heng. view -[hH] will dump header as well	jstalker	More...				almost 17 years ago
laneToBam now uses appropriate lsf_queue	jstalker	More...				almost 17 years ago
Added centre & platform to RG header. Fixed so actually uses the lsf_queue passed	jstalker	More...				almost 17 years ago
fixed RG tag in maq2sam to use the accession rather than the library. Also added centre and platform to the RG header	jstalker	More...				almost 17 years ago
[no comment]	jstalker	More...				almost 17 years ago
This needs to be merged back in to HierarchyUtilities asap	jstalker	More...				almost 17 years ago
Uncommented all the system lines, put chomps in on the backticked ls loops (which should be globs anyway)	jstalker	More...				almost 17 years ago
[no comment]	jstalker	More...				almost 17 years ago
[no comment]	jstalker	More...				almost 17 years ago
[no comment]	tk2	More...				almost 17 years ago
updated tk2 modules	tk2	More...				almost 17 years ago
moved mapping_454 into modules	tk2	More...				almost 17 years ago
moved mapping_slx into modules	tk2	More...				almost 17 years ago
Commit of bwa exectuable, as compiled on sf4.	ar12	More...				almost 17 years ago
moved recalibration scripts into bin	tk2	More...				almost 17 years ago
[no comment]	tk2	More...				almost 17 years ago
[no comment]	tk2	More...				almost 17 years ago

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