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Analyzed 1 day ago. based on code collected 1 day ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Feb 15, 2025 — Feb 15, 2026 Showing page 132 of 136 Search / Filter on:
Workaround the rtype commandline option. Ignore the switches that are 'implied' when an rtype is defined as a switch.	ar12	More...				almost 17 years ago
Commented out print statement used for debugging.	ar12	More...				almost 17 years ago
Last commit was stupid. Change so only needs the md5 file to run - it has to be the same list of lanes anyway, and hashing the md5s for lookup is entirely unnecessary.	jstalker	More...				almost 17 years ago
allow the list of lanes to be the srf list used for transfer	jstalker	More...				almost 17 years ago
Added convenience calls to retrieve a sample and library by name	jstalker	More...				almost 17 years ago
Added sub name to return e.g. 1234_1. This is just the concat of run_name and run_lane with '_'. Doesn't attempt to add _s_ if appropriate	jstalker	More...				almost 17 years ago
stubbed out lanes and lane_id subs	jstalker	More...				almost 17 years ago
minor pdoc change	jstalker	More...				almost 17 years ago
added subs to populate and return sample_id and project_id for library	jstalker	More...				almost 17 years ago
Added functionality to deal with rtypes. If an rtypes is defined then all other command-line parameters are ignored. If not set, then parameters are concatenated onto the command line.	ar12	More...				almost 17 years ago
added samtools with rmdupse	tk2	More...				almost 17 years ago
updated ssaha2Build to latest	tk2	More...				almost 17 years ago
script to build the laneinfo file for input to minimalsubmission.pl	jstalker	More...				almost 17 years ago
Moved study and project into the input file. Now outputs a set of xmls for each study in the input file - this is to make G1K submissions easier, as there is now a study for each population.	jstalker	More...				almost 17 years ago
added ssaha2 v2.3.0.1	tk2	More...				almost 17 years ago
Pointed to relocated ssaha binary on nfs rather than lustre.	ar12	More...				almost 17 years ago
Added use lib to use Dave Carter's libs	jstalker	More...				almost 17 years ago
Script to generate XMLs for ERA submission	jstalker	More...				almost 17 years ago
text change	jstalker	More...				almost 17 years ago
Removing SeqScape. This API for the SequenceScape web interface is not up-to-date with recent SequenceScape API changes, and was never very good anyway.	jstalker	More...				almost 17 years ago
[no comment]	jstalker	More...				almost 17 years ago
Fix for sam files with * as the chromosome	jstalker	More...				almost 17 years ago
Pushing load_qctracking.pl into the pipeline bin dir	jstalker	More...				almost 17 years ago
Added getMpsaFastq which retrieves a fastq from mpsa and md5 checks it. On fail, unlinks the fastq.	jstalker	More...				almost 17 years ago
Modified the way in which barcode files are read.	ar12	More...				almost 17 years ago
tabs to double spaces	tk2	More...				almost 17 years ago
tabs to double spaces	tk2	More...				almost 17 years ago
tabs to double spaces	tk2	More...				almost 17 years ago
merging HierarchyUtilities.pm and _jws.pm version	tk2	More...				almost 17 years ago
merging HierarchyUtilities.pm and _jws.pm version	tk2	More...				almost 17 years ago

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